YRC Public Data Repository - Protein Structure Prediction

Protein:	CYTR_ECOLI
Organism:	Escherichia coli
Length:	341 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYTR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|167038831, gi... - gi\|167038831\|ref\|YP_001661816.1\| periplasmic binding protein/LacI transcriptional regulator [Thermoa... gi\|242258204, gi... - gi\|242258204\|ref\|ZP_04803030.1\| transcriptional regulator, LacI family [Thermoanaerobacter sp. X513]...	375.0	[0..10]	[340..3]
gi\|20515183, gi\|... - gi\|20806727\|ref\|NP_621898.1\| transcriptional regulator [Thermoanaerobacter tengcongensis MB4], gi\|20... gi\|20806727 - gi\|20806727\|ref\|NP_621898.1\| Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi\|254478068, gi... - gi\|254478068\|ref\|ZP_05091451.1\| Periplasmic binding proteins and sugar binding domain of the LacI fa...	373.0	[0..10]	[338..3]
gi\|76797419, gi\|... - gi\|76797419\|ref\|ZP_00779738.1\| regulatory protein, LacI:Periplasmic binding protein/LacI transcripti... gi\|241882990, gi... - gi\|241904637\|ref\|ZP_04789316.1\| transcriptional regulator, LacI family [Thermoanaerobacter brockii s...	363.0	[0..10]	[340..3]
gi\|89209818, gi\|... - gi\|89209818\|ref\|ZP_01188212.1\| regulatory protein, LacI:Periplasmic binding protein/LacI transcripti...	357.0	[0..9]	[338..2]
gi\|82401152, gi\|... - gi\|82500860\|ref\|ZP_00886253.1\| regulatory protein, LacI [Caldicellulosiruptor saccharolyticus DSM 89...	357.0	[0..3]	[337..5]

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Predicted Domain #1

Region A:
Residues: [1-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAKKQETAA TMKDVALKAK VSTATVSRAL MNPDKVSQAT RNRVEKAARE VGYLPQPMGR  60
   61 NVKRNESRTI LVIVPDICDP FFSEIIRGIE VTAANHGYLV LIGDCAHQNQ QEKTFIDLII 120
  121 TKQIDGMLLL GSRLPFDASI EEQRNLPPMV MANEFAPELE LPTVHIDNLT AAFDAVNYLY 180
  181 EQGHKRIGCI AGPEEMPLCH YRLQGYVQAL RRCGIMVDPQ YIARGDFTFE AGSKAMQQLL 240
  241 DLPQPPTAVF CHSDVMALGA LSQAKRQGLK VPEDLSIIGF DNIDLTQFCD PPLTTIAQPR 300
  301 YEIGREAMLL LLDQMQGQHV GSGSRLMDCE LIIRGSTRAL P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	95.045757
Match:	1zvvA
Description:	Crystal structure of a ccpa-crh-dna complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.22720925836419	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: