YRC Public Data Repository - Protein Structure Prediction

Protein:	CBPM_ECOLI
Organism:	Escherichia coli
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CBPM_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|17430370 - gi\|17430370\|emb\|CAD17135.1\| probable transcription regulator protein [Ralstonia solanacearum GMI1000... gi\|17548064 - gi\|17548064\|ref\|NP_521466.1\| transcription regulator protein [Ralstonia solanacearum GMI1000]	102.0	[0..9]	[100..16]
gi\|117929325, gi... - gi\|88931631\|ref\|ZP_01137325.1\| regulatory protein, MerR [Acidothermus cellulolyticus 11B], gi\|889129...	102.0	[0..2]	[100..4]
gi\|7451293 - pir\|\|D70361 transcription regulator MerR family - Aquifex aeolicus gi\|2983291, gi\|1... - gi\|2983291\|gb\|AAC06883.1\| transcriptional regulator (MerR family) [Aquifex aeolicus VF5], gi\|1560610...	102.0	[0..1]	[98..1]
gi\|109674006, gi... - gi\|154173851\|ref\|YP_001408403.1\| putative heat shock protein HspR [Campylobacter curvus 525.92], gi\|...	101.0	[0..4]	[94..5]
gi\|108562847, gi... - gi\|108562847\|ref\|YP_627163.1\| putative heat shock protein [Helicobacter pylori HPAG1], gi\|107836620\|...	100.0	[0..4]	[96..5]
gi\|7451290 - pir\|\|A64648 probable heat shock protein - Helicobacter pylori (strain 26695) gi\|15645639, gi\|... - gi\|2314167\|gb\|AAD08067.1\| putative heat shock protein (hspR) [Helicobacter pylori 26695], gi\|1564563... gi\|216944224, gi... - gi\|217033283\|ref\|ZP_03438714.1\| hypothetical protein HP9810_9g36 [Helicobacter pylori 98-10], gi\|216...	100.0	[0..4]	[94..5]
gi\|69133946, gi\|... - gi\|69298712\|ref\|ZP_00620841.1\| regulatory protein, MerR [Silicibacter sp. TM1040], gi\|69133946\|gb\|EA...	100.0	[0..1]	[99..147]
gi\|68229263, gi\|... - gi\|68229263\|ref\|ZP_00568460.1\| regulatory protein, MerR [Frankia sp. EAN1pec], gi\|68203219\|gb\|EAN173...	100.0	[0..2]	[99..38]
gi\|51371892 - gi\|51371892\|dbj\|BAD36810.1\| TipAL [Rhodococcus opacus] gi\|51371892 - gi\|51371892\|dbj\|BAD36810.1\| TipAL [Rhodococcus opacus]	100.0	[0..9]	[100..6]
gi\|109947661, gi... - gi\|109947661\|ref\|YP_664889.1\| heat shock transcriptional regulator [Helicobacter acinonychis str. Sh...	100.0	[0..4]	[94..5]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANVTVTFTI TEFCLHTGIS EEELNEIVGL GVVEPREIQE TTWVFDDHAA IVVQRAVRLR  60
   61 HELALDWPGI AVALTLMDDI AHLKQENRLL RQRLSRFVAH P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.221849
Match:	1q05A
Description:	Crystal structure of the Cu(I) form of E. coli CueR, a copper efflux regulator
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.383710737848186	bayes_pls_golite062009
transcription regulator activity	0.0849280803924433	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: