YRC Public Data Repository - Protein Structure Prediction

Protein:	BFR_ECOLI
Organism:	Escherichia coli
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BFR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|47125326 - gi\|47125326\|gb\|AAH70494.1\| FTH1 protein [Homo sapiens]	165.0	[0..4]	[153..63]
gi\|114637918 - gi\|114637918\|ref\|XP_001140124.1\| PREDICTED: similar to Ferritin heavy chain (Ferritin H subunit) (Pr...	163.0	[0..4]	[153..121]
gi\|17427359 - gi\|17427359\|emb\|CAD13878.1\| probable bacterioferritin bfr (cytochrome b-1) (cytochrome b-557) protei... gi\|17545069 - gi\|17545069\|ref\|NP_518471.1\| bacterioferritin [Ralstonia solanacearum GMI1000]	163.0	[0..1]	[158..1]
gi\|53758676, gi\|... - gi\|53804915\|ref\|YP_113265.1\| bacterioferritin [Methylococcus capsulatus str. Bath], gi\|53758676\|gb\|A...	163.0	[0..1]	[154..1]
gi\|37199962, gi\|... - gi\|37681211\|ref\|NP_935820.1\| bacterioferritin [Vibrio vulnificus YJ016], gi\|37199962\|dbj\|BAC95791.1\|...	162.0	[0..1]	[157..82]
gi\|83726456, gi\|... - gi\|83746871\|ref\|ZP_00943918.1\| Bacterioferritin [Ralstonia solanacearum UW551], gi\|83726456\|gb\|EAP73... gi\|207742195, gi... - gi\|207742195\|ref\|YP_002258587.1\| bacterioferritin bfr (cytochrome b-1) (cytochrome b-557) protein [R... gi\|207727792, gi... - gi\|207727792\|ref\|YP_002256186.1\| bacterioferritin bfr (cytochrome b-1) (cytochrome b-557) protein [R...	161.0	[0..1]	[158..1]
gi\|83404987 - gi\|83404987\|gb\|AAI11079.1\| Fth1 protein [Rattus norvegicus]	161.0	[0..4]	[153..64]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGDTKVINY LNKLLGNELV AINQYFLHAR MFKNWGLKRL NDVEYHESID EMKHADRYIE  60
   61 RILFLEGLPN LQDLGKLNIG EDVEEMLRSD LALELDGAKN LREAIGYADS VHDYVSRDMM 120
  121 IEILRDEEGH IDWLETELDL IQKMGLQNYL QAQIREEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	1bcfA
Description:	Bacterioferritin (cytochrome b1)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.393987187831157	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: