YRC Public Data Repository - Protein Structure Prediction

Protein:	BAX_ECOLI
Organism:	Escherichia coli
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BAX_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|254594927, gi... - gi\|254795527\|ref\|YP_003080364.1\| hypothetical protein ECSP_4566 [Escherichia coli O157:H7 str. TW143... gi\|13363927, gi\|... - gi\|15833707\|ref\|NP_312480.1\| putative ATP-binding protein [Escherichia coli O157:H7], gi\|13363927\|db... gi\|209755090, gi... - pir\|\|C86032 probable ATP-binding protein bax [imported] - Escherichia coli (strain O157:H7, substrai... gi\|15804116, gi\|... - gi\|15804116\|ref\|NP_290155.1\| hypothetical protein Z4995 [Escherichia coli O157:H7 EDL933], gi\|125183... gi\|13363927, gi\|... - gi\|15833707\|ref\|NP_312480.1\| hypothetical protein ECs4453 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|217322613, gi... - gi\|217326392\|ref\|ZP_03442476.1\| protein bax [Escherichia coli O157:H7 str. TW14588], gi\|217322613\|gb... gi\|209397567, gi... - gi\|209397567\|ref\|YP_002273056.1\| protein bax [Escherichia coli O157:H7 str. EC4115], gi\|209158967\|gb... gi\|189404684, gi... - gi\|189404684\|ref\|ZP_02810449.2\| protein bax [Escherichia coli O157:H7 str. EC869], gi\|189374408\|gb\|E... gi\|189403714, gi... - gi\|189403714\|ref\|ZP_02784669.2\| protein bax [Escherichia coli O157:H7 str. EC4501], gi\|189369722\|gb\|... gi\|189402754, gi... - gi\|189402754\|ref\|ZP_02790992.2\| protein bax [Escherichia coli O157:H7 str. EC4486], gi\|189364640\|gb\|... gi\|189401875, gi... - gi\|189401875\|ref\|ZP_02778397.2\| protein bax [Escherichia coli O157:H7 str. EC4401], gi\|189359316\|gb\|... gi\|208819892, gi... - gi\|208819892\|ref\|ZP_03260212.1\| protein bax [Escherichia coli O157:H7 str. EC4042], gi\|208740015\|gb\|... gi\|208814425, gi... - gi\|208814425\|ref\|ZP_03255754.1\| protein bax [Escherichia coli O157:H7 str. EC4045], gi\|208735702\|gb\|... gi\|208806339, gi... - gi\|208806339\|ref\|ZP_03248676.1\| protein bax [Escherichia coli O157:H7 str. EC4206], gi\|208726140\|gb\|... gi\|189405521, gi... - gi\|189405521\|ref\|ZP_02822415.2\| protein bax [Escherichia coli O157:H7 str. EC508], gi\|189380150\|gb\|E... gi\|189010123, gi... - gi\|189010123\|ref\|ZP_02804728.2\| protein bax [Escherichia coli O157:H7 str. EC4076], gi\|189002549\|gb\|... gi\|188024509, gi... - gi\|188024509\|ref\|ZP_02771906.2\| protein bax [Escherichia coli O157:H7 str. EC4113], gi\|188018377\|gb\|... gi\|187775699, gi... - gi\|187775699\|ref\|ZP_02797475.2\| protein bax [Escherichia coli O157:H7 str. EC4196], gi\|187771734\|gb\|...	249.0	[0..1]	[274..1]
gi\|24114845, gi\|... - gi\|24114845\|ref\|NP_709355.1\| hypothetical protein SF3614 [Shigella flexneri 2a str. 301], gi\|2405407... gi\|30065145, gi\|... - gi\|30065145\|ref\|NP_839316.1\| hypothetical protein S4155 [Shigella flexneri 2a str. 2457T], gi\|300434...	248.0	[0..1]	[274..1]
gi\|81242959, gi\|... - gi\|82778811\|ref\|YP_405160.1\| hypothetical protein SDY_3709 [Shigella dysenteriae Sd197], gi\|81242959...	248.0	[0..1]	[274..1]
gi\|16131441\|ref\|... - putative ATP-binding protein [Escherichia coli K12], putative ATP-binding protein [Escherichia coli ... gi\|466708\|gb\|AAB... - unnamed protein product [Escherichia coli] gi\|466708, gi\|10... - gi\|466708\|gb\|AAB18547.1\| unnamed protein product [Escherichia coli str. K-12 substr. MG1655], pir\|\|S...	245.0	[0..1]	[274..1]
gi\|205354731, gi... - gi\|205354731\|ref\|YP_002228532.1\| hypothetical protein SG3769 [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=bax] [protein=hypothetical protein] [protein_id=YP_005239898.1] [location=complement(3863082..... gi\|16766948, gi\|... - gi\|16766948\|ref\|NP_462563.1\| hypothetical protein STM3663 [Salmonella typhimurium LT2], gi\|16422227\|... gi\|206710703, gi... - gi\|207858900\|ref\|YP_002245551.1\| hypothetical protein SEN3485 [Salmonella enterica subsp. enterica s...	245.0	[0..1]	[274..1]
gi\|56415556, gi\|... - gi\|56415556\|ref\|YP_152631.1\| hypothetical protein SPA3514 [Salmonella enterica subsp. enterica serov... gi\|197364483, gi... - gi\|197364483\|ref\|YP_002144120.1\| hypothetical protein SSPA3281 [Salmonella enterica subsp. enterica ...	244.0	[0..1]	[274..1]
gi\|62182168, gi\|... - gi\|62182168\|ref\|YP_218585.1\| hypothetical protein SC3598 [Salmonella enterica subsp. enterica serova... gi\|224469990, gi... - gi\|224585462\|ref\|YP_002639261.1\| putative exported amidase [Salmonella enterica subsp. enterica sero...	244.0	[0..1]	[274..1]
gi\|77867024, gi\|... - gi\|77954023\|ref\|ZP_00818424.1\| similar to Uncharacterized FlgJ-related protein [Marinobacter aquaeol...	243.0	[0..3]	[272..1]
gi\|25513418, gi\|... - gi\|25513418\|pir\|\|AI0979 probable exported amidase STY4135 [imported] - Salmonella enterica subsp. en... gi\|29139771, gi\|... - gi\|29144134\|ref\|NP_807476.1\| hypothetical protein t3856 [Salmonella enterica subsp. enterica serovar... gi\|16762647 - gi\|16762647\|ref\|NP_458264.1\| hypothetical protein STY4135 [Salmonella enterica subsp. enterica serov...	241.0	[0..1]	[274..1]
gi\|82719677, gi\|... - gi\|82742966\|ref\|ZP_00905638.1\| bax protein, putative [Shewanella sp. W3-18-1], gi\|82719677\|gb\|EAP545... gi\|77812854, gi\|... - gi\|77812854\|ref\|ZP_00812137.1\| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Shewanella put... gi\|124509826, gi... - gi\|124546774\|ref\|ZP_01705809.1\| bax protein, putative [Shewanella putrefaciens 200], gi\|124509826\|gb...	232.0	[0..21]	[272..9]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILTPIRRYG AMILMLLTLV FSSEVLAKTH TTTASQKSHL TKASNKQVSS KQEYSRNSAK  60
   61 SSSLPDLRKY PSGTPRKKAF LRTVMPYITS QNAAITAERN WLISKQYQG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [110-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QWSPAERARL KDIAKRYKVK WSGNTRKIPW NTLLERVDII PTSMVATMAA AESGWGTSKL  60
   61 ARNNNNLFGM KCMKGRCTNA PGKVKGYSQF SSVKESVSAY VTNLNTHPAY SSFRKSRAQL 120
  121 RKADQEVTAT AMIHKLKGYS TKGKSYNNYL FAMYQDNQRL IAAHM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.06
Match:	1gbsA
Description:	CRYSTAL STRUCTURE OF BLACK SWAN GOOSE-TYPE LYSOZYME AT 1.8 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.936204440471049	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: