YRC Public Data Repository - Protein Structure Prediction

Protein:	BAX_ECOLI
Organism:	Escherichia coli
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BAX_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|254594927, gi... - gi\|254795527\|ref\|YP_003080364.1\| hypothetical protein ECSP_4566 [Escherichia coli O157:H7 str. TW143... gi\|13363927, gi\|... - gi\|15833707\|ref\|NP_312480.1\| putative ATP-binding protein [Escherichia coli O157:H7], gi\|13363927\|db... gi\|209755090, gi... - pir\|\|C86032 probable ATP-binding protein bax [imported] - Escherichia coli (strain O157:H7, substrai... gi\|15804116, gi\|... - gi\|15804116\|ref\|NP_290155.1\| hypothetical protein Z4995 [Escherichia coli O157:H7 EDL933], gi\|125183... gi\|13363927, gi\|... - gi\|15833707\|ref\|NP_312480.1\| hypothetical protein ECs4453 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|217322613, gi... - gi\|217326392\|ref\|ZP_03442476.1\| protein bax [Escherichia coli O157:H7 str. TW14588], gi\|217322613\|gb... gi\|209397567, gi... - gi\|209397567\|ref\|YP_002273056.1\| protein bax [Escherichia coli O157:H7 str. EC4115], gi\|209158967\|gb... gi\|189404684, gi... - gi\|189404684\|ref\|ZP_02810449.2\| protein bax [Escherichia coli O157:H7 str. EC869], gi\|189374408\|gb\|E... gi\|189403714, gi... - gi\|189403714\|ref\|ZP_02784669.2\| protein bax [Escherichia coli O157:H7 str. EC4501], gi\|189369722\|gb\|... gi\|189402754, gi... - gi\|189402754\|ref\|ZP_02790992.2\| protein bax [Escherichia coli O157:H7 str. EC4486], gi\|189364640\|gb\|... gi\|189401875, gi... - gi\|189401875\|ref\|ZP_02778397.2\| protein bax [Escherichia coli O157:H7 str. EC4401], gi\|189359316\|gb\|... gi\|208819892, gi... - gi\|208819892\|ref\|ZP_03260212.1\| protein bax [Escherichia coli O157:H7 str. EC4042], gi\|208740015\|gb\|... gi\|208814425, gi... - gi\|208814425\|ref\|ZP_03255754.1\| protein bax [Escherichia coli O157:H7 str. EC4045], gi\|208735702\|gb\|... gi\|208806339, gi... - gi\|208806339\|ref\|ZP_03248676.1\| protein bax [Escherichia coli O157:H7 str. EC4206], gi\|208726140\|gb\|... gi\|189405521, gi... - gi\|189405521\|ref\|ZP_02822415.2\| protein bax [Escherichia coli O157:H7 str. EC508], gi\|189380150\|gb\|E... gi\|189010123, gi... - gi\|189010123\|ref\|ZP_02804728.2\| protein bax [Escherichia coli O157:H7 str. EC4076], gi\|189002549\|gb\|... gi\|188024509, gi... - gi\|188024509\|ref\|ZP_02771906.2\| protein bax [Escherichia coli O157:H7 str. EC4113], gi\|188018377\|gb\|... gi\|187775699, gi... - gi\|187775699\|ref\|ZP_02797475.2\| protein bax [Escherichia coli O157:H7 str. EC4196], gi\|187771734\|gb\|...	249.0	[0..1]	[274..1]
gi\|24114845, gi\|... - gi\|24114845\|ref\|NP_709355.1\| hypothetical protein SF3614 [Shigella flexneri 2a str. 301], gi\|2405407... gi\|30065145, gi\|... - gi\|30065145\|ref\|NP_839316.1\| hypothetical protein S4155 [Shigella flexneri 2a str. 2457T], gi\|300434...	248.0	[0..1]	[274..1]
gi\|81242959, gi\|... - gi\|82778811\|ref\|YP_405160.1\| hypothetical protein SDY_3709 [Shigella dysenteriae Sd197], gi\|81242959...	248.0	[0..1]	[274..1]
gi\|16131441\|ref\|... - putative ATP-binding protein [Escherichia coli K12], putative ATP-binding protein [Escherichia coli ... gi\|466708\|gb\|AAB... - unnamed protein product [Escherichia coli] gi\|466708, gi\|10... - gi\|466708\|gb\|AAB18547.1\| unnamed protein product [Escherichia coli str. K-12 substr. MG1655], pir\|\|S...	245.0	[0..1]	[274..1]
gi\|205354731, gi... - gi\|205354731\|ref\|YP_002228532.1\| hypothetical protein SG3769 [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=bax] [protein=hypothetical protein] [protein_id=YP_005239898.1] [location=complement(3863082..... gi\|16766948, gi\|... - gi\|16766948\|ref\|NP_462563.1\| hypothetical protein STM3663 [Salmonella typhimurium LT2], gi\|16422227\|... gi\|206710703, gi... - gi\|207858900\|ref\|YP_002245551.1\| hypothetical protein SEN3485 [Salmonella enterica subsp. enterica s...	245.0	[0..1]	[274..1]
gi\|56415556, gi\|... - gi\|56415556\|ref\|YP_152631.1\| hypothetical protein SPA3514 [Salmonella enterica subsp. enterica serov... gi\|197364483, gi... - gi\|197364483\|ref\|YP_002144120.1\| hypothetical protein SSPA3281 [Salmonella enterica subsp. enterica ...	244.0	[0..1]	[274..1]
gi\|62182168, gi\|... - gi\|62182168\|ref\|YP_218585.1\| hypothetical protein SC3598 [Salmonella enterica subsp. enterica serova... gi\|224469990, gi... - gi\|224585462\|ref\|YP_002639261.1\| putative exported amidase [Salmonella enterica subsp. enterica sero...	244.0	[0..1]	[274..1]
gi\|77867024, gi\|... - gi\|77954023\|ref\|ZP_00818424.1\| similar to Uncharacterized FlgJ-related protein [Marinobacter aquaeol...	243.0	[0..3]	[272..1]
gi\|25513418, gi\|... - gi\|25513418\|pir\|\|AI0979 probable exported amidase STY4135 [imported] - Salmonella enterica subsp. en... gi\|29139771, gi\|... - gi\|29144134\|ref\|NP_807476.1\| hypothetical protein t3856 [Salmonella enterica subsp. enterica serovar... gi\|16762647 - gi\|16762647\|ref\|NP_458264.1\| hypothetical protein STY4135 [Salmonella enterica subsp. enterica serov...	241.0	[0..1]	[274..1]
gi\|82719677, gi\|... - gi\|82742966\|ref\|ZP_00905638.1\| bax protein, putative [Shewanella sp. W3-18-1], gi\|82719677\|gb\|EAP545... gi\|77812854, gi\|... - gi\|77812854\|ref\|ZP_00812137.1\| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Shewanella put... gi\|124509826, gi... - gi\|124546774\|ref\|ZP_01705809.1\| bax protein, putative [Shewanella putrefaciens 200], gi\|124509826\|gb...	232.0	[0..21]	[272..9]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILTPIRRYG AMILMLLTLV FSSEVLAKTH TTTASQKSHL TKASNKQVSS KQEYSRNSAK  60
   61 SSSLPDLRKY PSGTPRKKAF LRTVMPYITS QNAAITAERN WLISKQYQG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.485	N/A	N/A	a.118.13	Arp2/3 complex 16 kDa subunit ARPC5
View	Download	0.405	N/A	N/A	a.118.1	ARM repeat
View	Download	0.405	N/A	N/A	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.386	N/A	N/A	a.39.1	EF-hand
View	Download	0.367	N/A	N/A	a.118.1	ARM repeat

Predicted Domain #2

Region A:
Residues: [110-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QWSPAERARL KDIAKRYKVK WSGNTRKIPW NTLLERVDII PTSMVATMAA AESGWGTSKL  60
   61 ARNNNNLFGM KCMKGRCTNA PGKVKGYSQF SSVKESVSAY VTNLNTHPAY SSFRKSRAQL 120
  121 RKADQEVTAT AMIHKLKGYS TKGKSYNNYL FAMYQDNQRL IAAHM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.06
Match:	1gbsA
Description:	CRYSTAL STRUCTURE OF BLACK SWAN GOOSE-TYPE LYSOZYME AT 1.8 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.936204440471049	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: