YRC Public Data Repository - Protein Structure Prediction

Protein:	ATPD_ECOLI
Organism:	Escherichia coli
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPD_ECOLI.

Description	E-value	Query Range	Subject Range
ATPD_VIBPA - ATP synthase subunit delta OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=atpH P... ATPD_VIBPA - ATP synthase subunit delta OS=Vibrio parahaemolyticus GN=atpH PE=3 SV=1	199.0	[0..1]	[177..1]
gi\|91226235, gi\|... - gi\|91226235\|ref\|ZP_01261075.1\| F0F1 ATP synthase subunit delta [Vibrio alginolyticus 12G01], gi\|9118...	199.0	[0..1]	[177..1]
ATPD_VIBAL - ATP synthase subunit delta OS=Vibrio alginolyticus GN=atpH PE=3 SV=1 gi\|116185028, gi... - gi\|75855547\|ref\|ZP_00763195.1\| COG0712: F0F1-type ATP synthase, delta subunit (mitochondrial oligomy...	198.0	[0..1]	[177..1]
gi\|37681438, gi\|... - gi\|37681438\|ref\|NP_936047.1\| ATP synthase subunit D [Vibrio vulnificus YJ016], gi\|37200190\|dbj\|BAC96...	196.0	[0..1]	[177..5]
ATPD_VIBVU - ATP synthase subunit delta OS=Vibrio vulnificus GN=atpH PE=3 SV=1 ATPD_VIBVY - ATP synthase subunit delta OS=Vibrio vulnificus (strain YJ016) GN=atpH PE=3 SV=2 ATPD_VIBVU - ATP synthase subunit delta OS=Vibrio vulnificus (strain CMCP6) GN=atpH PE=3 SV=1	196.0	[0..1]	[177..1]
gi\|90437669, gi\|... - gi\|90581148\|ref\|ZP_01236947.1\| ATP synthase subunit D [Vibrio angustum S14], gi\|90437669\|gb\|EAS62861...	195.0	[0..1]	[177..1]
gi\|89049489, gi\|... - gi\|89074725\|ref\|ZP_01161183.1\| ATP synthase subunit D [Photobacterium sp. SKA34], gi\|89049489\|gb\|EAR...	192.0	[0..1]	[177..1]
gi\|85835041, gi\|... - gi\|86147157\|ref\|ZP_01065473.1\| ATP synthase subunit D [Vibrio sp. MED222], gi\|85835041\|gb\|EAQ53183.1... ATPD1_VIBTL - ATP synthase subunit delta 1 OS=Vibrio tasmaniensis (strain LGP32) GN=atpH1 PE=3 SV=1	192.0	[0..1]	[177..1]
gi\|90413751, gi\|... - gi\|90413751\|ref\|ZP_01221739.1\| ATP synthase subunit D [Photobacterium profundum 3TCK], gi\|90325220\|g...	191.0	[0..1]	[177..1]
gi\|77961819, gi\|... - gi\|77961819\|ref\|ZP_00825649.1\| COG0712: F0F1-type ATP synthase, delta subunit (mitochondrial oligomy...	191.0	[0..1]	[177..1]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEFITVARP YAKAAFDFAV EHQSVERWQD MLAFAAEVTK NEQMAELLSG ALAPETLAES  60
   61 FIAVCGEQLD ENGQNLIRVM AENGRLNALP DVLEQFIHLR AVSEATAEVD VISAAALSEQ 120
  121 QLAKISAAME KRLSRKVKLN CKIDKSVMAG VIIRAGDMVI DGSVRGRLER LADVLQS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.221849
Match:	1abvA
Description:	N-TERMINAL DOMAIN OF THE DELTA SUBUNIT OF THE F1F0-ATP SYNTHASE FROM ESCHERICHIA COLI, NMR, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism	14.7422820889757	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	12.9278793563887	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	11.1783751674743	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	10.0680074813957	bayes_pls_golite062009
cation transmembrane transporter activity	6.33234611151135	bayes_pls_golite062009
ion transmembrane transporter activity	6.2273693570543	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.80354336411519	bayes_pls_golite062009
transporter activity	4.02094516916098	bayes_pls_golite062009
substrate-specific transporter activity	3.93981768923161	bayes_pls_golite062009
transmembrane transporter activity	3.93135059223129	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: