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View Structure Prediction Details

Protein: AMT2_ARATH
Organism: Arabidopsis thaliana
Length: 475 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMT2_ARATH.

Description E-value Query
Range
Subject
Range
gi|7140936 - gi|7140936|gb|AAF37192.1|AF182039_1 ammonium transporter [Arabidopsis thaliana]
431.0 [0..1] [475..1]

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Predicted Domain #1
Region A:
Residues: [1-475]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAYDPSLP EVPEWLNKGD NAWQLTAATL VGLQSMPGLV ILYASIVKKK WAVNSAFMAL  60
   61 YAFAAVLLCW VLLCYKMAFG EELLPFWGKG GPAFDQGYLK GQAKIPNSNV AAPYFPMATL 120
  121 VYFQFTFAAI TTILVAGSVL GRMNIKAWMA FVPLWLIFSY TVGAYSIWGG GFLYQWGVID 180
  181 YSGGYVIHLS SGVAGFVAAY WVGPRPKADR ERFPPNNVLL MLAGAGLLWM GWSGFNGGAP 240
  241 YAANLTSSIA VLNTNLSAAT SLLVWTTLDV IFFGKPSVIG AIQGMVTGLA GVTPGAGLIQ 300
  301 TWAAIIIGVV SGTAPWASMM IIHKKSALLQ KVDDTLAVFY THAVAGLLGG IMTGLFAHPD 360
  361 LCVLVLPLPA TRGAFYGGNG GKQLLKQLAG AAFIAVWNVV STTIILLAIR VFIPLRMAEE 420
  421 ELGIGDDAAH GEEAYALWGD GEKFDATRHV QQFERDQEAA HPSYVHGARG VTIVL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 103.0
Match: 1xqeA
Description: The mechanism of ammonia transport based on the crystal structure of AmtB of E. coli.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ammonium transmembrane transporter activity 10.0624820335928 bayes_pls_golite062009
organic cation transmembrane transporter activity 9.07420898067257 bayes_pls_golite062009
cation transmembrane transporter activity 7.57181833547312 bayes_pls_golite062009
ion transmembrane transporter activity 7.46308808953548 bayes_pls_golite062009
methylammonium transmembrane transporter activity 7.38326654060024 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 7.08971867997216 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 7.03159982829686 bayes_pls_golite062009
transporter activity 5.3870893301235 bayes_pls_golite062009
transmembrane transporter activity 5.3046132351753 bayes_pls_golite062009
substrate-specific transporter activity 5.16067985999244 bayes_pls_golite062009
high affinity secondary active ammonium transmembrane transporter activity 3.34961792720479 bayes_pls_golite062009
amine transmembrane transporter activity 2.81164277777293 bayes_pls_golite062009
active transmembrane transporter activity 1.08017669832334 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle