YRC Public Data Repository - Protein Structure Prediction

Protein:	ACCD_ECOLI
Organism:	Escherichia coli
Length:	304 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACCD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|117624506, gi... - gi\|117624506\|ref\|YP_853419.1\| acetyl-coenzyme A carboxylase carboxyl transferase subunit beta [Esche... gi\|187771256, gi... - gi\|187775757\|ref\|ZP_02797960.2\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|188017314, gi... - gi\|188024699\|ref\|ZP_02773192.2\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|189404953, gi... - gi\|189404953\|ref\|ZP_02812235.2\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|227835726, gi... - gi\|227887376\|ref\|ZP_04005181.1\| acetyl-CoA carboxylase [Escherichia coli 83972], gi\|227835726\|gb\|EEJ... gi\|192932062, gi... - gi\|193062396\|ref\|ZP_03043491.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|237704795, gi... - gi\|237704795\|ref\|ZP_04535276.1\| acetyl-coenzyme A carboxylase carboxyl transferase subunit beta [Esc... gi\|194432917, gi... - gi\|194432917\|ref\|ZP_03065201.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Shigella... gi\|194436189, gi... - gi\|194436189\|ref\|ZP_03068291.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|91211613, gi\|... - gi\|91211613\|ref\|YP_541599.1\| acetyl-coenzyme A carboxylase carboxyl transferase subunit beta [Escher... tr\|A0A0G3HQY2\|A0... - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli (strain K12) GN=...	359.0	[0..1]	[304..29]
ACCD_SHISS - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Shigella sonnei (strain Ss046) GN...	356.0	[0..1]	[304..1]
gi\|26109110, gi\|... - gi\|26248705\|ref\|NP_754745.1\| acetyl-CoA carboxylase beta subunit [Escherichia coli CFT073], gi\|26109...	356.0	[0..1]	[304..29]
gi\|190909759, gi... - gi\|75243127\|ref\|ZP_00726833.1\| COG0777: Acetyl-CoA carboxylase beta subunit [Escherichia coli F11], ... ACCD_ECOL5 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli O6:K15:H31 (stra...	354.0	[0..1]	[304..1]
ACCD_SHIDS - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Shigella dysenteriae serotype 1 (... ACCD_SHIB3 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Shigella boydii serotype 18 (stra...	354.0	[0..1]	[304..1]
ACCD_SHIBS - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Shigella boydii serotype 4 (strai...	354.0	[0..1]	[304..1]
gi\|192958428, gi... - gi\|75238099\|ref\|ZP_00722104.1\| COG0777: Acetyl-CoA carboxylase beta subunit [Escherichia coli E11001...	353.0	[0..1]	[304..1]
gi\|62180938, gi\|... - gi\|62180938\|ref\|YP_217355.1\| acetyl-CoA carboxylase beta subunit [Salmonella enterica subsp. enteric...	352.0	[0..1]	[304..27]
gi\|30063742, gi\|... - gi\|30063742\|ref\|NP_837913.1\| acetyl-CoA carboxylase subunit beta [Shigella flexneri 2a str. 2457T], ... ACCD_SHIFL - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Shigella flexneri GN=accD PE=3 SV... gi\|56383640, gi\|... - gi\|56480089\|ref\|NP_708198.2\| acetyl-CoA carboxylase subunit beta [Shigella flexneri 2a str. 301], gi...	351.0	[0..1]	[304..1]
gi\|81591786 - gi\|81591786\|sp\|Q8XFJ5.1\|ACCD_SALTI RecName: Full=Acetyl-coenzyme A carboxylase carboxyl transferase ... ACCD_SALPB - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella paratyphi B (strain AT... gi\|221271887 - gi\|221271887\|sp\|Q57LY8.2\|ACCD_SALCH RecName: Full=Acetyl-coenzyme A carboxylase carboxyl transferase... gi\|213852687 - gi\|213852687\|ref\|ZP_03382219.1\| acetyl-CoA carboxylase subunit beta [Salmonella enterica subsp. ente... gi\|214002038 - gi\|214002038\|ref\|ZP_03412773.1\| acetyl-CoA carboxylase subunit beta [Salmonella enterica subsp. ente... gi\|224467671, gi... - gi\|224583144\|ref\|YP_002636942.1\| acetyl-CoA carboxylase beta subunit [Salmonella enterica subsp. ent... gi\|81571880 - gi\|81571880\|sp\|Q7CQ41.1\|ACCD_SALTY RecName: Full=Acetyl-coenzyme A carboxylase carboxyl transferase ... ACCD_SALEP - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella enteritidis PT4 (strai... gi\|213161332 - gi\|213161332\|ref\|ZP_03347042.1\| acetyl-CoA carboxylase subunit beta [Salmonella enterica subsp. ente... gi\|213426979 - gi\|213426979\|ref\|ZP_03359729.1\| acetyl-CoA carboxylase subunit beta [Salmonella enterica subsp. ente... gi\|213622846 - gi\|213622846\|ref\|ZP_03375629.1\| acetyl-CoA carboxylase subunit beta [Salmonella enterica subsp. ente... ACCD_SALDC - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella dublin (strain CT_0202... gi\|199603616, gi... - gi\|200386518\|ref\|ZP_03213130.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonel... gi\|204929109, gi... - gi\|204929109\|ref\|ZP_03220252.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonel... ACCD_SALG2 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella gallinarum (strain 287... gi\|29136638, gi\|... - gi\|29141013\|ref\|NP_804355.1\| acetyl-CoA carboxylase subunit beta [Salmonella enterica subsp. enteric... gi\|16761291 - gi\|16761291\|ref\|NP_456908.1\| acetyl-CoA carboxylase subunit beta [Salmonella enterica subsp. enteric... ACCD_SALTI - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella typhi GN=accD PE=3 SV=... ACCD_SALTY - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella typhimurium (strain LT... ACCD_SALTY - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella typhimurium GN=accD PE... ACCD_SALCH - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella choleraesuis GN=accD P... lcl\|NC_016856.1_... - [gene=accD] [protein=acetyl-CoA carboxylase subunit beta] [protein_id=YP_005238449.1] [location=comp... gi\|194459188, gi... - gi\|194472824\|ref\|ZP_03078808.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonel... ACCD_SALSV - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella schwarzengrund (strain... ACCD_SALA4 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella agona (strain SL483) G... gi\|197240961, gi... - gi\|197262706\|ref\|ZP_03162780.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonel... gi\|168261610, gi... - gi\|205349406\|gb\|EDZ36037.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonella e... gi\|205344775, gi... - gi\|205344775\|gb\|EDZ31539.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonella e... ACCD_SALNS - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella newport (strain SL254)... ACCD_SALHS - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella heidelberg (strain SL4... gi\|238912355 - gi\|238912355\|ref\|ZP_04656192.1\| acetyl-CoA carboxylase subunit beta [Salmonella enterica subsp. ente... gi\|205328777, gi... - gi\|205328777\|gb\|EDZ15541.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonella e... ACCD_SALPB - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella paratyphi B (strain AT... gi\|205335653, gi... - gi\|205335653\|gb\|EDZ22417.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonella e... gi\|197289728, gi... - gi\|197289728\|gb\|EDY29091.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonella e... gi\|168242492, gi... - gi\|205338503\|gb\|EDZ25267.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonella e... ACCD_SALCH - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella choleraesuis (strain S... gi\|167549627, gi... - gi\|205325252\|gb\|EDZ13091.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonella e...	351.0	[0..1]	[304..1]

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Predicted Domain #1

Region A:
Residues: [1-304]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWIERIKSN ITPTRKASIP EGVWTKCDSC GQVLYRAELE RNLEVCPKCD HHMRMTARNR  60
   61 LHSLLDEGSL VELGSELEPK DVLKFRDSKK YKDRLASAQK ETGEKDALVV MKGTLYGMPV 120
  121 VAAAFEFAFM GGSMGSVVGA RFVRAVEQAL EDNCPLICFS ASGGARMQEA LMSLMQMAKT 180
  181 SAALAKMQER GLPYISVLTD PTMGGVSASF AMLGDLNIAE PKALIGFAGP RVIEQTVREK 240
  241 LPPGFQRSEF LIEKGAIDMI VRRPEMRLKL ASILAKLMNL PAPNPEAPRE GVVVPPVPDQ 300
  301 EPEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	98.154902
Match:	2f9yB
Description:	No description for 2f9yB was found.

Predicted functions:

Term	Confidence	Notes
acetyl-CoA carboxylase activity	10.6452464693016	bayes_pls_golite062009
CoA carboxylase activity	10.4560118435089	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	10.291155621143	bayes_pls_golite062009
ligase activity	5.44906329604668	bayes_pls_golite062009
biotin carboxylase activity	4.73758144982083	bayes_pls_golite062009
enoyl-CoA hydratase activity	2.20341273353803	bayes_pls_golite062009
catalytic activity	1.46154163027498	bayes_pls_golite062009
3-hydroxyacyl-CoA dehydrogenase activity	0.71437881404683	bayes_pls_golite062009
dodecenoyl-CoA delta-isomerase activity	0.712418056146834	bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing C=C bonds	0.0918189681606029	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: