YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE36417
Organism: Caenorhabditis elegans
Length: 416 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE36417.

Description E-value Query
Range
Subject
Range
MPI_MACFA - Mannose-6-phosphate isomerase OS=Macaca fascicularis GN=MPI PE=2 SV=3
437.0 [0..2] [399..6]

Back

Predicted Domain #1
Region A:
Residues: [1-416]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLKLKCTVN NYAWGPKGNS SMAGSLALDG GHIPNLDKDK PYAEFWVGTH ANGPAHVIEK  60
   61 DIALKQLLAT SPELQGKHEK GNLSFLFKVL SVLGPLSIQI HPTKEQGKLL HATDPKNYPD 120
  121 DNHKPEIAIA LTEFELLSGF RQHSQISEYL KLYSEIQELL TEEEKSQIDS LGSYGESSAQ 180
  181 VLKKIFSRIW RTPKEKLQIV VDKLARRIQG HENKTALDEI IVYLFTLYPG DVGVFAPIFL 240
  241 NYFKLQPGEA TFLEPNMPHA YLKGDCVECM ADSDNTIRAG LTPKYIDVES LVEMLNYDET 300
  301 LLPKYIPNEL DDGSLLFTPR GIDEFWVQEV KGPAGSIYQL PYSESCSVLT VLYGTATVTL 360
  361 GDASQVLNRG EVVFIGATHD AERPKINISD DFLAFRAFTP SPRALESLSN KRLIID

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 100.0
Match: 1pmiA
Description: HUMAN RANTES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.34748354759945 bayes_pls_golite062009
nucleic acid binding 1.03324343117049 bayes_pls_golite062009
transcription regulator activity 0.926308336563306 bayes_pls_golite062009
intramolecular oxidoreductase activity 0.8581504516071 bayes_pls_golite062009
DNA binding 0.748609148146118 bayes_pls_golite062009
catalytic activity 0.401988496917198 bayes_pls_golite062009
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen 0.353173877157675 bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses 0.348782780143283 bayes_pls_golite062009
transcription factor activity 0.137510342474893 bayes_pls_golite062009
protein binding 0.0111341701600279 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle