| Protein: | tbx-9 |
| Organism: | Caenorhabditis elegans |
| Length: | 292 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tbx-9.
| Description | E-value | Query Range |
Subject Range |
|
|
305.0 | [0..7] | [284..771] |
|
Region A: Residues: [1-203] |
1 11 21 31 41 51
| | | | | |
1 MSKVKVSIEG SQETLWKIFH AEVNEMIVTK NGRKLFPKLE YIVEGLDENK LYAIMLQLQP 60
61 VGESRFKFSG GKWQETGKAE KQVDAKKMWH ADGVRKGSDW MWSSICFDRV KISNYSESNN 120
121 ASMIYLNSMH KYIPVLTIYE SPSESPFCVP QSSNQIVATA KFPHTEFIAV TAYQNQKITD 180
181 LKIKHNSFAK GFRDGNLSRK RRS
|
| Detection Method: |  |
| Confidence: | 75.154902 |
| Match: | 1h6fA |
| Description: | T-box protein 3, tbx3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.42929256050781 | bayes_pls_golite062009 |
| DNA binding | 5.31133900263778 | bayes_pls_golite062009 |
| nucleic acid binding | 5.16722510757739 | bayes_pls_golite062009 |
| transcription factor activity | 4.50526425463039 | bayes_pls_golite062009 |
| binding | 3.82913410895101 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.81812565096059 | bayes_pls_golite062009 |
| protein binding | 2.61625563263605 | bayes_pls_golite062009 |
| transcription activator activity | 2.56828839945617 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.23604897773023 | bayes_pls_golite062009 |
| DNA strand annealing activity | 1.36275472058409 | bayes_pls_golite062009 |
| transcription repressor activity | 1.27337392672914 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.6498675574078 | bayes_pls_golite062009 |
| chromatin binding | 0.63177553202971 | bayes_pls_golite062009 |
| transcription factor binding | 0.628837188707778 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.62643527396553 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.0996675597396202 | bayes_pls_golite062009 |
| protein dimerization activity | 0.0889583851427092 | bayes_pls_golite062009 |
|
Region A: Residues: [204-292] |
1 11 21 31 41 51
| | | | | |
1 PSYSDGSNSQ SPSPKSRSPP EVAPLQSMPP INPFLFYFPH MLSENLPVQF PFAFPFLSPL 60
61 PSTPSSSSSE LSIVKEEDQE VEEDIDIVG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
