YRC Public Data Repository - Protein Structure Prediction

Protein:	PSP2
Organism:	Saccharomyces cerevisiae
Length:	593 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSP2.

Description	E-value	Query Range	Subject Range
PSP2 - Asn rich cytoplasmic protein that contains RGG motifs; high-copy suppressor of group II intron-splic...	575.0	[0..16]	[593..1]
gi\|44984002 - gi\|44984002\|gb\|AAS53012.1\| AER332Wp [Ashbya gossypii ATCC 10895] gi\|45190934, gi\|... - gi\|45190934\|ref\|NP_985188.1\| AER332Wp [Ashbya gossypii ATCC 10895], gi\|44984002\|gb\|AAS53012.1\| AER33...	402.0	[0..7]	[540..2]
PPE24_MYCTO - Uncharacterized PPE family protein PPE24 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) G...	243.0	[0..303]	[592..127]
gi\|254231946, gi... - gi\|81254371\|ref\|ZP_00878894.1\| COG5651: PPE-repeat proteins [Mycobacterium tuberculosis C], gi\|25423...	239.0	[0..303]	[592..127]
gi\|148505704, gi... - gi\|148661552\|ref\|YP_001283075.1\| PPE family protein [Mycobacterium tuberculosis H37Ra], gi\|148505704... PPE24_MYCTU - Uncharacterized PPE family protein PPE24 OS=Mycobacterium tuberculosis GN=ppe24 PE=3 SV=1 PPE24_MYCTU - Uncharacterized PPE family protein PPE24 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) G...	239.0	[0..303]	[592..127]
gi\|31792941, gi\|... - gi\|31792941\|ref\|NP_855434.1\| PPE family protein [Mycobacterium bovis AF2122/97], gi\|31618532\|emb\|CAD...	237.0	[0..303]	[592..127]
gi\|148822960, gi... - gi\|76784544\|ref\|ZP_00771728.1\| COG5651: PPE-repeat proteins [Mycobacterium tuberculosis F11], gi\|148...	234.0	[0..303]	[592..127]
gi\|49640714, gi\|... - gi\|50303281\|ref\|XP_451582.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640714\|emb\|CAH0197... gi\|49640714 - gi\|49640714\|emb\|CAH01975.1\| KLLA0B01155p [Kluyveromyces lactis]	226.0	[0..1]	[296..1]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTNNTSNNN GTTKKMSLEE FLGNDTLGES VWDEEDINLD AISNTTNIDI LKQTKAGEHQ  60
   61 RDGHQQHPHG GHGPMNRSRF SNAGP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [86-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGGGSMGDFA NHHHPLQHQQ GPPYIVKFSD LPPRFSNFDI EDLFQAKFTK FIKFKLFWEI  60
   61 NKNPSISTLK SGSIFDQNFK RDSKVAFVEL YTSRDMDKIL NYWTTPLKEI YHITTAPAEF 120
  121 EDFKDYS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [213-304]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKVKLLTDPK DDAGKPFITK TQRSKSNPFG SAKPVDTQSK ILDIEEKMEN LHVEDTTTLR  60
   61 ASLIPSSDSM ATTATGSKIT ILKKQTPTEE ES

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [305-593]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSATPTPKPL SYSEVVERSV VNETSKKGTP LSKLDSPALE LQSKPDKSDE FKGGDEQGFE  60
   61 KGGDDKAQLD VSNDKDKGSE TDVDKQFTFK NVEREHSMSR TKYNGNHNNN NGNFRGSNRY 120
  121 RGGPNGSSYK GGHNNRGNRG GYRGGSSYNN NNNNTNDNNN NNNNSSSNNN NGSRYHDRQN 180
  181 NEEGLTSDSS LDASGNKKND FTNSTSNTQQ YSIFKPASGF LGQGNNDSIR NNGRGNYNSS 240
  241 GMNGGSRGRG FGRGRGFGRG AYNNRGSRGG RGSSGNYSNY NNRTTDMPL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits