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View Structure Prediction Details

Protein: YIP4
Organism: Saccharomyces cerevisiae
Length: 235 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIP4.

Description E-value Query
Range
Subject
Range
gi|57042739 - gi|57042739|ref|XP_535226.1| PREDICTED: similar to smooth muscle cell associated protein 5 [Canis fa...
238.0 [0..3] [234..44]

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Predicted Domain #1
Region A:
Residues: [1-235]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYGREDTTI EPDFIEPDAP LAASGGVADN IGGTMQNSGS RGTLDETVLQ TLKRDVVEIN  60
   61 SRLKQVVYPH FPSFFSPSDD GIGAADNDIS ANCDLWAPLA FIILYSLFVS HARSLFSSLF 120
  121 VSSWFILLVM ALHLRLTKPH QRVSLISYIS ISGYCLFPQV LNALVSQILL PLAYHIGKQN 180
  181 RWIVRVLSLV KLVVMALCLM WSVAAVSWVT KSKTIIEIYP LALCLFGMAW LSTIL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 38.657577
Match: PF04893.8
Description: No description for PF04893.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle