| Protein: | VSR4_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 628 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VSR4_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
419.0 | [0..22] | [628..22] |
|
Region A: Residues: [1-187] |
1 11 21 31 41 51
| | | | | |
1 MKQLLCYLPW LLLLSLVVSP FNEARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS 60
61 MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR GDCFFALKVW NAQKAGASAV 120
121 LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW 180
181 REAVPHP
|
| Detection Method: |  |
| Confidence: | 16.221849 |
| Match: | 1xf1A |
| Description: | Structure of C5a peptidase- a key virulence factor from Streptococcus |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [188-562] |
1 11 21 31 41 51
| | | | | |
1 DDRVEYELWT NSNDECGVKC DMLMEFVKDF KGAAQILEKG GFTQFRPHYI TWYCPHAFTL 60
61 SRQCKSQCIN KGRYCAPDPE QDFSSGYDGK DVVVENLRQL CVYKVANETG KPWVWWDYVT 120
121 DFQIRCPMKE KKYNKDCAES VIKSLGIDSR KIDKCMGDPD ADLDNPVLKE EQDAQVGKGT 180
181 RGDVTILPTL VVNNRQYRGK LEKSAVLKAL CSGFEESTEP AICLSTDMET NECLDNNGGC 240
241 WQDKSANITA CKDTFRGKVC VCPIVDGVRF KGDGYSHCEP SGPGRCTINN GGCWHEERDG 300
301 HAFSACVDKD SVKCECPPGF KGDGVKKCED INECKEKKAC QCPECSCKNT WGSYECSCSG 360
361 DLLYMRDHDT CISKT
|
| Detection Method: | |
| Confidence: | 44.0 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.286076792172079 | bayes_pls_golite062009 |
| protein binding | 0.14494900666454 | bayes_pls_golite062009 |
|
Region A: Residues: [563-628] |
1 11 21 31 41 51
| | | | | |
1 GSQVKSAWAA VWLIMLSLGL AAAGAYLVYK YRLRQYMDSE IRAIMAQYMP LDSQPEVPNH 60
61 TNDERA
|
| Detection Method: | |
| Confidence: | 8.69897 |
| Match: | 1jv2B |
| Description: | Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains |
Matching Structure (courtesy of the PDB): |
|
