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View Structure Prediction Details

Protein: gi|15220119, gi|...
Organism: Arabidopsis thaliana
Length: 394 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15220119, gi|....

Description E-value Query
Range
Subject
Range
gi|48895332, gi|... - gi|71675283|ref|ZP_00673028.1| Aminotransferase, class I and II [Trichodesmium erythraeum IMS101], g...
363.0 [0..1] [386..1]

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Predicted Domain #1
Region A:
Residues: [1-394]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSFGMLSRR TLGTDMPVMA QIRSLMAELT NPMSLAQGVV HWQPPQKALE KVKELVWDPI  60
   61 ISSYGPDEGL PELRQALLKK LREENKLTNS QVMVTAGANQ AFVNLVITLC DAGDSVVMFE 120
  121 PYYFNSYMAF QMTGVTNIIV GPGQSDTLYP DADWLERTLS ESKPTPKVVT VVNPGNPSGT 180
  181 YVPEPLLKRI AQICKDAGCW LIVDNTYEYF MYDGLKHCCV EGDHIVNVFS FSKTYGMMGW 240
  241 RLGYIAYSER LDGFATELVK IQDNIPICAA IISQRLAVYA LEEGSGWITE RVKSLVKNRD 300
  301 IVKEALEPLG KENVKGGEGA IYLWAKLPEG HRDDFKVVRW LAHRHGVVVI PGCASGSPGY 360
  361 LRVSFGGLQE VEMRAAAARL RKGIEELLHH GMVE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 97.0
Match: 1j32A
Description: Aspartate aminotransferase, AAT
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
L-aspartate:2-oxoglutarate aminotransferase activity 5.51961002550688 bayes_pls_golite062009
catalytic activity 2.29878871754893 bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity 1.63055151623667 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 1.63055151623667 bayes_pls_golite062009
transferase activity 1.44093490824786 bayes_pls_golite062009
transferase activity, transferring nitrogenous groups 1.28316822767388 bayes_pls_golite062009
transaminase activity 1.24990480711889 bayes_pls_golite062009
4-aminobutyrate transaminase activity 0.99097016439114 bayes_pls_golite062009
pyridoxal phosphate binding 0.16957228630576 bayes_pls_golite062009
vitamin B6 binding 0.16957228630576 bayes_pls_golite062009
cystathionine beta-lyase activity 0.0833010353195099 bayes_pls_golite062009
nucleic acid binding 0.013097682076602 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle