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View Structure Prediction Details

Protein: ACCO1_ARATH
Organism: Arabidopsis thaliana
Length: 310 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACCO1_ARATH.

Description E-value Query
Range
Subject
Range
gi|73761685 - gi|73761685|gb|AAZ83342.1| ACC oxidase 1 [Gossypium hirsutum]
337.0 [0..8] [309..2]

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Predicted Domain #1
Region A:
Residues: [1-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLIKEREME IPVIDFAELD GEKRSKTMSL LDHACDKWGF FMVDNHGIDK ELMEKVKKMI  60
   61 NSHYEEHLKE KFYQSEMVKA LSEGKTSDAD WESSFFISHK PTSNICQIPN ISEELSKTMD 120
  121 EYVCQLHKFA ERLSKLMCEN LGLDQEDIMN AFSGPKGPAF GTKVAKYPEC PRPELMRGLR 180
  181 EHTDAGGIIL LLQDDQVPGL EFFKDGKWVP IPPSKNNTIF VNTGDQLEIL SNGRYKSVVH 240
  241 RVMTVKHGSR LSIATFYNPA GDAIISPAPK LLYPSGYRFQ DYLKLYSTTK FGDKGPRLET 300
  301 MKKMGNADSA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.0
Match: 1w9yA
Description: The structure of ACC oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.921320409505 bayes_pls_golite062009
binding 0.588242505102319 bayes_pls_golite062009
nucleic acid binding 0.0678642854814351 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle