| Protein: | PP125_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 482 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PP125_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
437.0 | [0..2] | [481..98] |
|
Region A: Residues: [1-419] |
1 11 21 31 41 51
| | | | | |
1 MKRLFSKSLC TSAAGANLKP PPADSAAIAK LILSSPNTTH QDDQFLLSTK TTPWTPNLVN 60
61 SVLKRLWNHG PKALQFFHFL DNHHREYVHD ASSFDLAIDI AARLHLHPTV WSLIHRMRSL 120
121 RIGPSPKTFA IVAERYASAG KPDKAVKLFL NMHEHGCFQD LASFNTILDV LCKSKRVEKA 180
181 YELFRALRGR FSVDTVTYNV ILNGWCLIKR TPKALEVLKE MVERGINPNL TTYNTMLKGF 240
241 FRAGQIRHAW EFFLEMKKRD CEIDVVTYTT VVHGFGVAGE IKRARNVFDE MIREGVLPSV 300
301 ATYNAMIQVL CKKDNVENAV VMFEEMVRRG YEPNVTTYNV LIRGLFHAGE FSRGEELMQR 360
361 MENEGCEPNF QTYNMMIRYY SECSEVEKAL GLFEKMGSGD CLPNLDTYNI LISGMFVRK
|
| Detection Method: |  |
| Confidence: | 40.09691 |
| Match: | 1w3bA |
| Description: | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.02652482814057 | bayes_pls_golite062009 |
|
Region A: Residues: [420-482] |
1 11 21 31 41 51
| | | | | |
1 RSEDMVVAGK LLLEMVERGF IPRKFTFNRV LNGLLLTGNQ AFAKEILRLQ SKSGSRLLRK 60
61 FRL
|
| Detection Method: | |
| Confidence: | 4.09691 |
| Match: | 1zbpA |
| Description: | Crystal Structure of the Hypothetical protein VPA1032 from Vibrio parahaemolyticus, Northeast Structural Genomics Target VpR44 |
Matching Structure (courtesy of the PDB): |
|
