YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15230468, gi\|...
Organism:	Arabidopsis thaliana
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15230468, gi|....

Description	E-value	Query Range	Subject Range
MYO5A - myosin VA (heavy chain 12, myoxin)	128.0	[0..3]	[103..781]
gi\|68445604 - gi\|68445604\|dbj\|BAE03307.1\| myosin Va [Sus scrofa]	126.0	[0..3]	[103..780]
MYO5A_RAT - Unconventional myosin-Va OS=Rattus norvegicus GN=Myo5a PE=1 SV=1	126.0	[0..3]	[103..781]
gi\|74000721 - gi\|74000721\|ref\|XP_535487.2\| PREDICTED: similar to Myosin-5A (Myosin Va) (Dilute myosin heavy chain,...	125.0	[0..3]	[101..858]
gi\|114657109, gi... - gi\|114657111\|ref\|XP_510412.2\| PREDICTED: myosin VA (heavy polypeptide 12, myoxin) isoform 7 [Pan tro...	125.0	[0..3]	[103..781]
gi\|76661274 - gi\|76661274\|ref\|XP_615219.2\| PREDICTED: similar to Myosin-5A (Myosin Va) (Dilute myosin heavy chain,...	125.0	[0..3]	[101..794]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSKRLFGV VRRKLLRRSQ SRITIIRSSA PETTREEIAA VKIQAFFRGH LARRAFKALK  60
   61 SLVKLQAVAR GVLVRRQARI ALHCMHALAR LQVRVRARQL LSH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	2dfsA
Description:	No description for 2dfsA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits