YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PUP1_ARATH
Organism: Arabidopsis thaliana
Length: 356 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUP1_ARATH.

Description E-value Query
Range
Subject
Range
gi|109123815 - gi|109123815|ref|XP_001113968.1| PREDICTED: similar to solute carrier family 35, member E1 [Macaca m...
151.0 [0..20] [352..322]

Back

Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNGLIIINC IILTIGTCGG PLLTRLYFTN GGKRIWFMSF LSTAGFPIIL IPLLVSFLSR  60
   61 RRSNRNPNNA EN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [73-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRKTKLFLME TPLFIASIVI GLLTGLDNYL YSYGLAYLPV STSSLIIGTQ LAFNALFAFL  60
   61 LVKQKFTPFS INAVVLLTVG IGILALHSDG DKPAKESKKE YVVGFLMTVV AALLYAFILP 120
  121 LVELTYKKAR QE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.12
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [205-356]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITFPLVLEIQ MVMCLAATFF CVIGMFIVGD FKVIAREARE FKIGGSVFYY ALIVITGIIW  60
   61 QGFFLGAIGI VFCASSLASG VLISVLLPVT EVFAVVCFRE KFQAEKGVSL LLSLWGFVSY 120
  121 FYGEFKSGKK VVDKPQPPET ELPILPVSDY VA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle