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View Structure Prediction Details

Protein: CLPP2_ARATH
Organism: Arabidopsis thaliana
Length: 241 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLPP2_ARATH.

Description E-value Query
Range
Subject
Range
gi|91068770, gi|... - gi|91205226|ref|YP_537581.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii RML36...
gi|157802741, gi... - gi|157827437|ref|YP_001496501.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii O...
241.0 [0..3] [230..36]

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Predicted Domain #1
Region A:
Residues: [1-241]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRGLVSGAK MLSSTPSSMA TSIATGRRSY SLIPMVIEHS SRGERAYDIF SRLLKERIIC  60
   61 INGPINDDTS HVVVAQLLYL ESENPSKPIH MYLNSPGGHV TAGLAIYDTM QYIRSPISTI 120
  121 CLGQAASMAS LLLAAGAKGQ RRSLPNATVM IHQPSGGYSG QAKDITIHTK QIVRVWDALN 180
  181 ELYVKHTGQP LDVVANNMDR DHFMTPEEAK AFGIIDEVID ERPLELVKDA VGNESKDKSS 240
  241 S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.522879
Match: 1tg6A
Description: Crystallography and mutagenesis point to an essential role for the N-terminus of human mitochondrial ClpP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.46154163027498 bayes_pls_golite062009
CoA carboxylase activity 0.939626895227199 bayes_pls_golite062009
acetyl-CoA carboxylase activity 0.764444938444292 bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds 0.621229080200493 bayes_pls_golite062009
enoyl-CoA hydratase activity 0.620657548610719 bayes_pls_golite062009
hydrolase activity 0.534319520590169 bayes_pls_golite062009
binding 0.367666848528835 bayes_pls_golite062009
ligase activity 0.32092496884003 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle