Protein: | LSM6A_ARATH |
Organism: | Arabidopsis thaliana |
Length: | 91 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSM6A_ARATH.
Description | E-value | Query Range |
Subject Range |
|
100.0 | [0..2] | [81..198] |
Region A: Residues: [1-91] |
1 11 21 31 41 51 | | | | | | 1 MSGVEEKVSG TTKTPADFLK SIRGRPVVVK LNSGVDYRGT LTCLDGYMNI AMEQTEEYVN 60 61 GQLKNKYGDA FIRGNNVLYI STVNMTVADG A |
Detection Method: | |
Confidence: | 17.69897 |
Match: | 1n9rA |
Description: | Small nuclear ribonucleoprotein F, Smf |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
9.36615441177233 | bayes_pls_golite062009 | |
RNA binding | 5.81718051012035 | bayes_pls_golite062009 |
nucleic acid binding | 2.69031444148163 | bayes_pls_golite062009 |
mRNA binding | 2.57166143288861 | bayes_pls_golite062009 |
binding | 2.44117021254507 | bayes_pls_golite062009 |
protein binding | 0.318488892917007 | bayes_pls_golite062009 |