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View Structure Prediction Details

Protein: SODF2_ARATH
Organism: Arabidopsis thaliana
Length: 305 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SODF2_ARATH.

Description E-value Query
Range
Subject
Range
gi|46402892, gi|... - gi|46402892|gb|AAS92465.1| Fe-superoxide dismutase 1 precursor [Lotus japonicus], gi|46402890|gb|AAS...
317.0 [0..1] [300..1]

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Predicted Domain #1
Region A:
Residues: [1-305]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNVAVTATP SSLLYSPLLL PSQGPNRRMQ WKRNGKRRLG TKVAVSGVIT AGFELKPPPY  60
   61 PLDALEPHMS RETLDYHWGK HHKTYVENLN KQILGTDLDA LSLEEVVLLS YNKGNMLPAF 120
  121 NNAAQAWNHE FFWESIQPGG GGKPTGELLR LIERDFGSFE EFLERFKSAA ASNFGSGWTW 180
  181 LAYKANRLDV ANAVNPLPKE EDKKLVIVKT PNAVNPLVWD YSPLLTIDTW EHAYYLDFEN 240
  241 RRAEYINTFM EKLVSWETVS TRLESAIARA VQREQEGTET EDEENPDDEV PEVYLDSDID 300
  301 VSEVD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.0
Match: 1unfX
Description: The crystal structure of the eukaryotic FeSOD from Vigna unguiculata suggests a new enzymatic mechanism
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
superoxide dismutase activity 7.08472506566271 bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor 7.08472506566271 bayes_pls_golite062009
oxidoreductase activity 2.73079314406851 bayes_pls_golite062009
protein binding 1.36581969443298 bayes_pls_golite062009
binding 1.30562201415299 bayes_pls_golite062009
antioxidant activity 0.766723962166325 bayes_pls_golite062009
cation binding 0.485672227923388 bayes_pls_golite062009
metal ion binding 0.485672227923388 bayes_pls_golite062009
ion binding 0.480092270451566 bayes_pls_golite062009
catalytic activity 0.390489225704392 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle