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View Structure Prediction Details

Protein: 2A5A_ARATH
Organism: Arabidopsis thaliana
Length: 495 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for 2A5A_ARATH.

Description E-value Query
Range
Subject
Range
gi|109084945 - gi|109084945|ref|XP_001112240.1| PREDICTED: similar to gamma isoform of regulatory subunit B56, prot...
809.0 [0..12] [494..246]

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Predicted Domain #1
Region A:
Residues: [1-495]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKKIMKGAN RKASKAEAND SSMYGFDPPG RSGPGSNMIV NHASRGSLVP SSPNSMAAAT  60
   61 TQPPPMYSVE PLPLFRDVSV SERQSLFLRK LQICCFQFDF TDTLKNAREK EIKRQTLLEL 120
  121 VDFIQSGAGK LTEVCQEEMV KMISVNIFRC LPPASHENTG QEPADLEEEE PYLEPSWPHL 180
  181 QLIYELLLRY IVPSDTDTKV AKRYIDHSFV LRLLELFETE DPREREYLKT ILHRIYGKFM 240
  241 VHRPFIRKAM NHIFYRFIYE TERHSGIGEL LEILGSIING FALPMKEEHK LFLIRALIPL 300
  301 HKPKPIAMYH QQLSYCIVQF VEKDYKLADT VIRGLLKFWP VTNCTKEVLF LGELEEVLEA 360
  361 TQTVEFQRCM VPLFQQIARC LSSSNFQVAE RALFLWNNEH VVGLIAQNRG VILPIIFASL 420
  421 EKNIESHWNQ AVHGLSANIK RMFMEMDPEL FEECQQQYEE KQAKSKQVEE QRQNRWRRLD 480
  481 EAVEERERED PMITS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2nppB
Description: No description for 2nppB was found.

Predicted functions:

Term Confidence Notes
binding 2.47395644967726 bayes_pls_golite062009
nucleic acid binding 1.13208464017585 bayes_pls_golite062009
protein binding 1.04044934052933 bayes_pls_golite062009
DNA binding 0.171056781378569 bayes_pls_golite062009
hydrolase activity 0.0579816100130538 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle