YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: GLO5_ARATH
Organism: Arabidopsis thaliana
Length: 368 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLO5_ARATH.

Description E-value Query
Range
Subject
Range
gi|54043095 - gi|54043095|gb|AAV28535.1| glycolate oxidase [Brassica napus]
327.0 [0..1] [365..1]

Back

Predicted Domain #1
Region A:
Residues: [1-368]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEITNVMEYE KIAKEKLPKM VYDYYASGAE DQWTLQENRN AFSRILFRPR ILIDVSKIDV  60
   61 STTVLGFNIS MPIMIAPTAM QKMAHPDGEL ATARATSAAG TIMTLSSWAT CSVEEVASTG 120
  121 PGIRFFQLYV YKDRNVVIQL VKRAEEAGFK AIALTVDTPR LGRRESDIKN RFALPRGLTL 180
  181 KNFEGLDLGK IDKTNDSGLA SYVAGQVDQS LSWKDIKWLQ SITSLPILVK GVITAEDARI 240
  241 AVEYGAAGII VSNHGARQLD YVPATIVALE EVVKAVEGRI PVFLDGGVRR GTDVFKALAL 300
  301 GASGVFVGRP SLFSLAADGE AGVRKMLQML RDEFELTMAL SGCRSLREIS RTHIKTDWDT 360
  361 PHYLSAKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 87.0
Match: 1al7A
Description: THREE-DIMENSIONAL STRUCTURES OF GLYCOLATE OXIDASE WITH BOUND ACTIVE-SITE INHIBITORS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on the CH-CH group of donors 5.53040931722074 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor 4.99876306143789 bayes_pls_golite062009
L-lactate dehydrogenase (cytochrome) activity 4.62364477397179 bayes_pls_golite062009
lactate dehydrogenase activity 4.48836665081946 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, cytochrome as acceptor 4.26416137128289 bayes_pls_golite062009
oxidoreductase activity 3.55520438339582 bayes_pls_golite062009
2,4-dienoyl-CoA reductase (NADPH) activity 2.53740821102118 bayes_pls_golite062009
catalytic activity 1.94749091175302 bayes_pls_golite062009
binding 1.13068993839107 bayes_pls_golite062009
(S)-2-hydroxy-acid oxidase activity 1.08257847863105 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor 0.922853827985629 bayes_pls_golite062009
NADH dehydrogenase activity 0.449365788564188 bayes_pls_golite062009
nucleic acid binding 0.428925551338656 bayes_pls_golite062009
protein binding 0.174608759343963 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor 0.0276574257865798 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle