YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|6633811, gi|2...
Organism: Arabidopsis thaliana
Length: 368 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6633811, gi|2....

Description E-value Query
Range
Subject
Range
gi|17381052 - gi|17381052|gb|AAL36338.1| putative peptide transporter protein [Arabidopsis thaliana]
340.0 [0..1] [368..1]
gi|125775393, gi... - gi|54638671|gb|EAL28073.1| GA16323-PA [Drosophila pseudoobscura], gi|125775393|ref|XP_001358930.1| G...
217.0 [0..60] [365..124]
CG12206-PC, CG12... - This gene is referred to in FlyBase by the symbol Dmel\CG12206 (CG12206, FBgn0029662). It is a prote...
200.0 [0..82] [365..308]
gi|7339706, gi|1... - gi|7339706|dbj|BAA92911.1| peptide transporter protein -like [Oryza sativa Japonica Group], gi|34904...
200.0 [0..1] [365..1]
gi|109074123 - gi|109074123|ref|XP_001099443.1| PREDICTED: similar to glutaredoxin cysteine-rich 1 protein [Macaca ...
197.0 [0..82] [365..2]
HGNC:31673|MIM:6... - cysteine rich 1
GRXCR1 - glutaredoxin, cysteine rich 1
gi|157169766, gi... - gi|157169766|gb|AAI53210.1| Glutaredoxin, cysteine rich 1 [synthetic construct], gi|151555085|gb|AAI...
196.0 [0..82] [365..2]

Back

Predicted Domain #1
Region A:
Residues: [1-94]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCTSSKQAK ANVVADVYKP PPSSFAVFDV NAIQEPWLKF EHEDDEKPPR STVFDRLDED  60
   61 DDDDDDDGDD APKTWEEVSK SLETKLKPAA VKPP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [95-303]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVDSVKPPAT PPRRLPRKSA SFHTLDELEV RAKRSIAAQI PTTMVKLKRT ESMSKLRPES  60
   61 DDRTESTQSS YSGPRSVKEN IFVKRDRERR EKEGNKKPVM NWDPLREFPE KCPPGGGEGL 120
  121 IVYTTSLQGV RRTYEDCMRV RAIMEQQGVV VDERDVSLDA GVLSELKELL QDEASVAPPR 180
  181 VFVKGRYLGG AAEVTAMNEN GKLGRVLRW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.39794
Match: 1nm3A
Description: C-terminal, Grx domain of Hybrid-Prx5; N-terminal, Prx domain of Hybrid-Prx5
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [304-368]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARVERVGEEG RLTCEGCGGA RWLPCFECGG SCKVAAVGAA KGERWERCVK CNENGLIRCP  60
   61 VCFVN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.37
Match: 1m1pA
Description: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle