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View Structure Prediction Details

Protein: gi|6633811, gi|2...
Organism: Arabidopsis thaliana
Length: 368 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6633811, gi|2....

Description E-value Query
Range
Subject
Range
gi|17381052 - gi|17381052|gb|AAL36338.1| putative peptide transporter protein [Arabidopsis thaliana]
340.0 [0..1] [368..1]
gi|125775393, gi... - gi|54638671|gb|EAL28073.1| GA16323-PA [Drosophila pseudoobscura], gi|125775393|ref|XP_001358930.1| G...
217.0 [0..60] [365..124]
CG12206-PC, CG12... - This gene is referred to in FlyBase by the symbol Dmel\CG12206 (CG12206, FBgn0029662). It is a prote...
200.0 [0..82] [365..308]
gi|7339706, gi|1... - gi|7339706|dbj|BAA92911.1| peptide transporter protein -like [Oryza sativa Japonica Group], gi|34904...
200.0 [0..1] [365..1]
gi|109074123 - gi|109074123|ref|XP_001099443.1| PREDICTED: similar to glutaredoxin cysteine-rich 1 protein [Macaca ...
197.0 [0..82] [365..2]
HGNC:31673|MIM:6... - cysteine rich 1
GRXCR1 - glutaredoxin, cysteine rich 1
gi|157169766, gi... - gi|157169766|gb|AAI53210.1| Glutaredoxin, cysteine rich 1 [synthetic construct], gi|151555085|gb|AAI...
196.0 [0..82] [365..2]

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Predicted Domain #1
Region A:
Residues: [1-94]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCTSSKQAK ANVVADVYKP PPSSFAVFDV NAIQEPWLKF EHEDDEKPPR STVFDRLDED  60
   61 DDDDDDDGDD APKTWEEVSK SLETKLKPAA VKPP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.588 N/A N/A d.56.1 GroEL-intermediate domain like
View Download 0.481 N/A N/A d.56.1 GroEL-intermediate domain like
View Download 0.454 N/A N/A d.52.3 Prokaryotic type KH domain (KH-domain type II)
View Download 0.446 N/A N/A b.55.1 PH domain-like
View Download 0.439 N/A N/A a.24.10 Histidine-containing phosphotransfer domain, HPT domain
View Download 0.434 N/A N/A a.283.1 Description not found.
View Download 0.397 N/A N/A a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.359 N/A N/A d.2.1 Lysozyme-like
View Download 0.329 N/A N/A d.77.1 Ribosomal protein L5
View Download 0.306 N/A N/A a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.270 N/A N/A d.52.8 Description not found.
View Download 0.262 N/A N/A a.278.1 Description not found.
View Download 0.210 N/A N/A d.51.1 Eukaryotic type KH-domain (KH-domain type I)

Predicted Domain #2
Region A:
Residues: [95-303]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVDSVKPPAT PPRRLPRKSA SFHTLDELEV RAKRSIAAQI PTTMVKLKRT ESMSKLRPES  60
   61 DDRTESTQSS YSGPRSVKEN IFVKRDRERR EKEGNKKPVM NWDPLREFPE KCPPGGGEGL 120
  121 IVYTTSLQGV RRTYEDCMRV RAIMEQQGVV VDERDVSLDA GVLSELKELL QDEASVAPPR 180
  181 VFVKGRYLGG AAEVTAMNEN GKLGRVLRW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.39794
Match: 1nm3A
Description: C-terminal, Grx domain of Hybrid-Prx5; N-terminal, Prx domain of Hybrid-Prx5
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [304-368]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARVERVGEEG RLTCEGCGGA RWLPCFECGG SCKVAAVGAA KGERWERCVK CNENGLIRCP  60
   61 VCFVN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.37
Match: 1m1pA
Description: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle