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View Structure Prediction Details

Protein: HMGB4_ARATH
Organism: Arabidopsis thaliana
Length: 138 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HMGB4_ARATH.

Description E-value Query
Range
Subject
Range
gi|109511369, gi... - gi|109514150|ref|XP_001067329.1| PREDICTED: similar to High mobility group protein 4 (HMG-4) (High m...
139.0 [0..5] [113..425]

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Predicted Domain #1
Region A:
Residues: [1-138]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN  60
   61 KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV QQYNLKLASG TNREEDDSDK 120
  121 SKSEVDEAVS EEEAEDDD

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Detection Method: PSI-BLAST
Confidence: 15.69897
Match: 2gzkA
Description: No description for 2gzkA was found.

Predicted functions:

Term Confidence Notes
binding 0.927928103499335 bayes_pls_golite062009
nucleic acid binding 0.38664561645052 bayes_pls_golite062009
DNA binding 0.37554038880732 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle