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View Structure Prediction Details

Protein: gi|20466812, gi|...
Organism: Arabidopsis thaliana
Length: 404 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20466812, gi|....

Description E-value Query
Range
Subject
Range
gi|21593983 - gi|21593983|gb|AAM65910.1| unknown [Arabidopsis thaliana]
536.0 [0..1] [404..1]

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Predicted Domain #1
Region A:
Residues: [1-220]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLRNLTISY EIIKSLKHAK EHSLGIQIRW ISSLKVVWKK DTRLDEAIEQ DKRYKLCARV  60
   61 VKEVLNEPGQ VIPLRYLEKR RERLRLTFKA KSFVEMNPSL FEIYYDRIKP KSDPVQFLRP 120
  121 TPRLRAFLDE EQRIYSENEP LLVSKLCQLL MMAKDKVISA DKLVHVKRDF GFPNDFLMKL 180
  181 VQKYPNYFRL TGLPEEGKSF LELVSWNPDF AKSKIELRAE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [221-404]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DETLKTGVRI RPNYNVKLPS GFFLRKEMRE WTRDWLEQDY ISPYEDVSHL DQASKEMEKR  60
   61 TVGVVHELLS LSLLKRVPVP TLGKFCDEFR FSNAFSSVFT RHSGIFYLSL KGGIKTAVLR 120
  121 EAYKDDELVD RDPLLAIKDK FLRLLEEGWQ ERKDRLKLQR EQVQKDREMM LAAKSNEPIE 180
  181 RLCD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle