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View Structure Prediction Details

Protein: gi|20466812, gi|...
Organism: Arabidopsis thaliana
Length: 404 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20466812, gi|....

Description E-value Query
Range
Subject
Range
gi|21593983 - gi|21593983|gb|AAM65910.1| unknown [Arabidopsis thaliana]
536.0 [0..1] [404..1]

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Predicted Domain #1
Region A:
Residues: [1-220]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLRNLTISY EIIKSLKHAK EHSLGIQIRW ISSLKVVWKK DTRLDEAIEQ DKRYKLCARV  60
   61 VKEVLNEPGQ VIPLRYLEKR RERLRLTFKA KSFVEMNPSL FEIYYDRIKP KSDPVQFLRP 120
  121 TPRLRAFLDE EQRIYSENEP LLVSKLCQLL MMAKDKVISA DKLVHVKRDF GFPNDFLMKL 180
  181 VQKYPNYFRL TGLPEEGKSF LELVSWNPDF AKSKIELRAE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [221-404]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DETLKTGVRI RPNYNVKLPS GFFLRKEMRE WTRDWLEQDY ISPYEDVSHL DQASKEMEKR  60
   61 TVGVVHELLS LSLLKRVPVP TLGKFCDEFR FSNAFSSVFT RHSGIFYLSL KGGIKTAVLR 120
  121 EAYKDDELVD RDPLLAIKDK FLRLLEEGWQ ERKDRLKLQR EQVQKDREMM LAAKSNEPIE 180
  181 RLCD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle