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View Structure Prediction Details

Protein: SODM2_ARATH
Organism: Arabidopsis thaliana
Length: 241 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SODM2_ARATH.

Description E-value Query
Range
Subject
Range
SODM_HORSE - Superoxide dismutase [Mn], mitochondrial OS=Equus caballus GN=SOD2 PE=2 SV=1
319.0 [0..8] [236..1]

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Predicted Domain #1
Region A:
Residues: [1-241]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTVIIIIF VAIFATTLHD ARGATMEPCL ESMKTASLPD LPYAYDALEP AISEEIMRLH  60
   61 HQKHHQTYVT QYNKALNSLR SAMADGDHSS VVKLQSLIKF NGGGHVNHAI FWKNLAPVHE 120
  121 GGGKPPHDPL ASAIDAHFGS LEGLIQKMNA EGAAVQGSGW VWFGLDRELK RLVVETTANQ 180
  181 DPLVTKGSHL VPLIGIDVWE HAYYPQYKNA RAEYLKNIWT VINWKYAADV FEKHTRDLDI 240
  241 N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.522879
Match: 1n0jA
Description: Mn superoxide dismutase (MnSOD)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
superoxide dismutase activity 7.08472506566271 bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor 7.08472506566271 bayes_pls_golite062009
oxidoreductase activity 2.73079314406851 bayes_pls_golite062009
protein binding 1.36581969443298 bayes_pls_golite062009
binding 1.30562201415299 bayes_pls_golite062009
antioxidant activity 0.766723962166325 bayes_pls_golite062009
cation binding 0.485672227923388 bayes_pls_golite062009
metal ion binding 0.485672227923388 bayes_pls_golite062009
ion binding 0.480092270451566 bayes_pls_golite062009
catalytic activity 0.390489225704392 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle