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View Structure Prediction Details

Protein: gi|15237460, gi|...
Organism: Arabidopsis thaliana
Length: 165 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15237460, gi|....

Description E-value Query
Range
Subject
Range
gi|5523975 - gi|5523975|gb|AAD44040.1|AF104023_1 polyprotein [Bovine viral diarrhea virus genotype 2]
131.0 [0..71] [150..169]

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Predicted Domain #1
Region A:
Residues: [1-165]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKLMAKRFC IGFGCGRIGT GNNKRSSSSS SSSSSFSSLS SSSSSSSSSC NNNNIKWEMR  60
   61 PGGMLVQKRS EDSNTEDLIS LRVSTVSQLS YEISIDANST FGELKMMIAI VSGIEAKEQR 120
  121 LLFRGKERED REYLHMIGVG DGDKVFLLQD PAFKELKHIH LPITV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.0
Match: 1z2mA
Description: Crystal Structure of ISG15, the Interferon-Induced Ubiquitin Cross Reactive Protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.0934358341245259 bayes_pls_golite062009
protein binding 0.03789551947602 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle