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View Structure Prediction Details

Protein: SMT2_ARATH
Organism: Arabidopsis thaliana
Length: 361 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMT2_ARATH.

Description E-value Query
Range
Subject
Range
gi|1061040, gi|1... - gi|1587694|prf||2207220A sterol C-methyltransferase, gi|1061040|emb|CAA61966.1| sterol-C-methyltrans...
280.0 [0..1] [361..1]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLTLFFTG ALVAVGIYWF LCVLGPAERK GKRAVDLSGG SISAEKVQDN YKQYWSFFRR  60
   61 PKEIETAEKV PDFVDTFY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.39794
Match: 1sqfA
Description: The crystal structure of E. coli Fmu binary complex with S-Adenosylmethionine at 2.1 A resolution
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [79-361]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLVTDIYEWG WGQSFHFSPS IPGKSHKDAT RLHEEMAVDL IQVKPGQKIL DVGCGVGGPM  60
   61 RAIASHSRAN VVGITINEYQ VNRARLHNKK AGLDALCEVV CGNFLQMPFD DNSFDGAYSI 120
  121 EATCHAPKLE EVYAEIYRVL KPGSMYVSYE WVTTEKFKAE DDEHVEVIQG IERGDALPGL 180
  181 RAYVDIAETA KKVGFEIVKE KDLASPPAEP WWTRLKMGRL AYWRNHIVVQ ILSAVGVAPK 240
  241 GTVDVHEMLF KTADYLTRGG ETGIFSPMHM ILCRKPESPE ESS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.0
Match: 1kp9A
Description: CmaA1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.25333584501255 bayes_pls_golite062009
transferase activity 1.07321114919891 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.644010137949015 bayes_pls_golite062009
methyltransferase activity 0.635463629299812 bayes_pls_golite062009
binding 0.422181371325275 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 0.181420092548185 bayes_pls_golite062009
DNA binding 0.00720144044916005 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle