YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|30688688, gi|...
Organism: Arabidopsis thaliana
Length: 502 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30688688, gi|....

Description E-value Query
Range
Subject
Range
gi|21537161 - gi|21537161|gb|AAM61502.1| prolylcarboxypeptidase-like protein [Arabidopsis thaliana]
394.0 [0..1] [502..1]

Back

Predicted Domain #1
Region A:
Residues: [1-349]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPYTILIL FIFSTSSSYL IPLAHSKIAR LGISSKTLKN EPDGSTQKVD ESNLKMYYFN  60
   61 QTLDHFTFTP ESYMTFQQRY AIDSTHWGGA KANAPILAFL GEESSLDSDL AAIGFLRDNG 120
  121 PRLNALLVYI EHRYYGETMP FGSAEEALKN ASTLGYLNAA QALADYAAIL LHVKEKYSTN 180
  181 HSPIIVIGGS YGGMLAAWFR LKYPHIALGA LASSAPLLYF EDTRPKFGYY YIVTKVFKEA 240
  241 SERCYNTIRN SWIEIDRVAG KPNGLSILSK QFKTCAPLNG SFDIKDFLDT IYAEAVQYNR 300
  301 GPNFWVAKVC NAINANPPNR RYNLLDRIFA GVVALVGNRT CYDTKMFAQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.69897
Match: 1azwA
Description: Proline iminopeptidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 3.13500795029724 bayes_pls_golite062009
catalytic activity 1.39629727416851 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.560001331598537 bayes_pls_golite062009
peptidase activity 0.49210021845334 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 0.204622919291197 bayes_pls_golite062009
structural molecule activity 0.151914509834157 bayes_pls_golite062009
binding 0.112743564301567 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [350-502]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTNNNIAWRW QSCSEIVMPV GYDKQDTMFP TAPFNMTSYI DGCKSYHGVT PRPHWITTYF  60
   61 GIQEVKLILQ KFGSNIIFSN GLSDPYSVGG VLEDISDTLV AITTKNGSHC LDITLKSKED 120
  121 PEWLVIQREK EIKVIDSWIS TYQNDLRDLN MPV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle