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View Structure Prediction Details

Protein: gi|25370558, gi|...
Organism: Arabidopsis thaliana
Length: 164 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25370558, gi|....

Description E-value Query
Range
Subject
Range
gi|15222527, gi|... - pir||D96662 hypothetical protein F24D7.8 [imported] - Arabidopsis thaliana, gi|15222527|ref|NP_1765...
209.0 [0..1] [164..1]

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Predicted Domain #1
Region A:
Residues: [1-164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAISHIIQP SLMQLQPRVF INFRGEDIRY GFISHLVAAF EVHGIYFFID KYEQRGNDLT  60
   61 YLFKRIEESK IVLAIFSGKY AQSKWCLNEL ATVKKLAEEN KLKVIPIFYK VKVGDVRRQK 120
  121 GEFGRNFWNL ARISSGEEIK QWKEALEFVS HKMGLELCEN RSST

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.221849
Match: 1fywA
Description: Toll-like receptor 2, TLR2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.261666574457319 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle