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View Structure Prediction Details

Protein: gi|6728965, gi|1...
Organism: Arabidopsis thaliana
Length: 246 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6728965, gi|1....

Description E-value Query
Range
Subject
Range
gi|74007805 - gi|74007805|ref|XP_549096.2| PREDICTED: similar to ATPase, Cu++ transporting, alpha polypeptide isof...
183.0 [0..5] [236..246]

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Predicted Domain #1
Region A:
Residues: [1-246]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKNKQNGES DNKSEKKNQK NGDSSVDKSD KKNQCKEIVL KVYMHCEGCA SQVSHCLRGY  60
   61 DGVEHIKTEI GDNKVVVSGK FDDPLKILRR VQKKFSRNAE MISPKHNPKQ DQKEPQQKKE 120
  121 SAPEIKTAIL RMNMHCEGCV HEIKRGIEKI KGIQSVEPDR SKSTVVVRGV MDPPKLVEKI 180
  181 KKKLGKHAEL LSQITEKGKD NNKKNNNKKE ESDGNKIFSY PPQYSSQHAY PSQIFSDENV 240
  241 HSCSIM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.69897
Match: 1p6tA
Description: Structure characterization of the water soluble region of P-type ATPase CopA from Bacillus subtilis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.246147507070597 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle