| Protein: | CDT1A_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 571 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDT1A_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
399.0 | [0..1] | [571..1] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL 60
61 SVKEIRQAAG SRRRSEDPVA
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [81-270] |
1 11 21 31 41 51
| | | | | |
1 SSAKSRLFFD SSSSSPSKRK SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT 60
61 FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV 120
121 EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR 180
181 VSSLMEEMAS
|
| Detection Method: | |
| Confidence: | 35.39794 |
| Match: | 1wlqC |
| Description: | Strucure of Geminin-Cdt1 complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
|
Region A: Residues: [271-452] |
1 11 21 31 41 51
| | | | | |
1 IPASKLFSSP ITSTPVKTTS SLAKPTSSQI NIAPTPTKPT STPAKQTLSE INILPTPVKP 60
61 VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP 120
121 PTKLVRRSLS LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ 180
181 ER
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [453-571] |
1 11 21 31 41 51
| | | | | |
1 KAIEDQNPAI SLAKRRRKMI ACLPKLFNVI HYLIQSIRRW VITKEELVHK IIAGHSDITD 60
61 RKEVEEQLIL LQEIVPEWMS EKKSSSGDVL VCINKLASPL TIRSRLEEEN KQEMAPLLS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
