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View Structure Prediction Details

Protein: 2A5E_ARATH
Organism: Arabidopsis thaliana
Length: 497 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for 2A5E_ARATH.

Description E-value Query
Range
Subject
Range
gi|109084945 - gi|109084945|ref|XP_001112240.1| PREDICTED: similar to gamma isoform of regulatory subunit B56, prot...
808.0 [0..12] [494..243]

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Predicted Domain #1
Region A:
Residues: [1-497]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNKIIKLGQ KKFNKSDQHH QDNNNNNNNT STNTVVRGSR TTTPAPSSVS NGESQTTAQS  60
   61 PSQTPNHPMF TTTPILEVLP LLKDVSSSDR PLLFMKKAHM CSCHCDFSDT LIMPREKEIK 120
  121 RQTLLELVDF LHSSSGKVNE TMQSELIRMV SANIFRCLPP AYHENTGAPP EGNDPEEEEP 180
  181 YLEPWWPHLQ LVYELLLRYV VSSEIEPKTA KKFINHTFVS RLLDLFDSED PREREYLKTV 240
  241 LHRIYGKFIF HRPFIRCSIY NIFYKFLYET ERCIGIGELL EILGSVINGF TVPMREEHRL 300
  301 YLVKAILPLH KSKGISIYHQ QLAYCVTQFV EKDYKLADTV IRGLLKFWPL TNCQKEVLFL 360
  361 GELEEVLDAT EPSEFQQCVV PLFTQIGKCL NSAHFQVAER ALFLWNNEHI VGLIAQNKDV 420
  421 IFPIIFEALE RNMKGHWNQA VHGLSENVRR MFLEMDTELF EECEKQYLEN EAKACELLEQ 480
  481 RELTWKRLEE AASLAAN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2nppB
Description: No description for 2nppB was found.

Predicted functions:

Term Confidence Notes
binding 1.2838670704442 bayes_pls_golite062009
protein binding 0.624843978607333 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle