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View Structure Prediction Details

Protein: CLPP6_ARATH
Organism: Arabidopsis thaliana
Length: 271 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLPP6_ARATH.

Description E-value Query
Range
Subject
Range
CLPP_VIBTL - ATP-dependent Clp protease proteolytic subunit OS=Vibrio tasmaniensis (strain LGP32) GN=clpP PE=3 SV...
gi|84387735, gi|... - gi|84387735|ref|ZP_00990751.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus 12B...
259.0 [0..72] [270..8]

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Predicted Domain #1
Region A:
Residues: [1-271]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGLAISPPL GLSFSSRTRN PKPTSFLSHN QRNPIRRIVS ALQSPYGDSL KAGLSSNVSG  60
   61 SPIKIDNKAP RFGVIEAKKG NPPVMPSVMT PGGPLDLSSV LFRNRIIFIG QPINAQVAQR 120
  121 VISQLVTLAS IDDKSDILMY LNCPGGSTYS VLAIYDCMSW IKPKVGTVAF GVAASQGALL 180
  181 LAGGEKGMRY AMPNTRVMIH QPQTGCGGHV EDVRRQVNEA IEARQKIDRM YAAFTGQPLE 240
  241 KVQQYTERDR FLSASEALEF GLIDGLLETE Y

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.154902
Match: 1tg6A
Description: Crystallography and mutagenesis point to an essential role for the N-terminus of human mitochondrial ClpP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.46154163027498 bayes_pls_golite062009
CoA carboxylase activity 0.939626895227199 bayes_pls_golite062009
acetyl-CoA carboxylase activity 0.764444938444292 bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds 0.621229080200493 bayes_pls_golite062009
enoyl-CoA hydratase activity 0.620657548610719 bayes_pls_golite062009
hydrolase activity 0.534319520590169 bayes_pls_golite062009
binding 0.367666848528835 bayes_pls_golite062009
ligase activity 0.32092496884003 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle