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View Structure Prediction Details

Protein: RH21_ARATH
Organism: Arabidopsis thaliana
Length: 733 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RH21_ARATH.

Description E-value Query
Range
Subject
Range
gi|108882993, gi... - gi|157121045|ref|XP_001653747.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti], gi|108882993|g...
424.0 [0..13] [732..127]

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Predicted Domain #1
Region A:
Residues: [1-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP  60
   61 ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR DRDRDRDRDR ERERDRERDR 120
  121 RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP 180
  181 SEKFRFSFDW ENTEDTSRDM NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD 240
  241 EIRKKDGIVE KPEEAA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [257-733]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQRVREEAAD TYDSFDMRVD RHWSDKRLEE MTERDWRIFR EDFNISYKGS RIPRPMRSWE  60
   61 ESKLTSELLK AVERAGYKKP SPIQMAAIPL GLQQRDVIGI AETGSGKTAA FVLPMLAYIS 120
  121 RLPPMSEENE TEGPYAVVMA PTRELAQQIE EETVKFAHYL GFRVTSIVGG QSIEEQGLKI 180
  181 TQGCEIVIAT PGRLIDCLER RYAVLNQCNY VVLDEADRMI DMGFEPQVAG VLDAMPSSNL 240
  241 KPENEEEELD EKKIYRTTYM FSATMPPGVE RLARKYLRNP VVVTIGTAGK TTDLISQHVI 300
  301 MMKESEKFFR LQKLLDELGE KTAIVFVNTK KNCDSIAKNL DKAGYRVTTL HGGKSQEQRE 360
  361 ISLEGFRAKR YNVLVATDVV GRGIDIPDVA HVINYDMPKH IEMYTHRIGR TGRAGKSGVA 420
  421 TSFLTLHDTE VFYDLKQMLV QSNSAVPPEL ARHEASRFKP GTVPDRPPRH SDTVYIN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 106.0
Match: 2db3A
Description: No description for 2db3A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle