| Protein: | gi|15242476, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 272 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15242476, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
268.0 | [0..24] | [270..84] |
|
Region A: Residues: [1-83] |
1 11 21 31 41 51
| | | | | |
1 MATKLILKKT TKSISRHQRN YLRRHRKSQI GCSPSPATTT VIATINKSIY RCHRTFLCLF 60
61 SRHATKGFKI LKPREDFQNS PYS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.638 | a.74.1 | Cyclin-like |
| View | Download | 0.611 | a.118.8 | TPR-like |
| View | Download | 0.460 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.426 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.420 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
|
Region A: Residues: [84-272] |
1 11 21 31 41 51
| | | | | |
1 LFHERSGKSF DETKKTIVLD LDETLVHSSM EKPEVPYDFV VNPKIDGQIL TFFVIKRPGV 60
61 DEFLKKIGEK YQIVVFTAGL REYASLVLDK LDPERRVISR SFYRDACSEI DGRLVKDLGF 120
121 VMRDLRRVVI VDDNPNSYAL QPENAFPIKP FSDDLEDVEL KKLGEFLYGD CVKFEDMRVA 180
181 LKEFVGRDE
|
| Detection Method: | |
| Confidence: | 60.30103 |
| Match: | 1ta0A |
| Description: | Three-dimensional structure of a RNA-polymerase II binding protein with associated ligand. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| hydrolase activity | 1.47320207089721 | bayes_pls_golite062009 |
| catalytic activity | 1.01036457072229 | bayes_pls_golite062009 |
| binding | 0.94971260438956 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.361621573920296 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.290412096949025 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.270489787263307 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.268673530091746 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.138050287397444 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.00945939738917856 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.00340058324101489 | bayes_pls_golite062009 |
