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View Structure Prediction Details

Protein: MTBC_ARATH
Organism: Arabidopsis thaliana
Length: 507 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MTBC_ARATH.

Description E-value Query
Range
Subject
Range
gi|110738254 - gi|110738254|dbj|BAF01056.1| hypothetical protein [Arabidopsis thaliana]
310.0 [0..1] [507..1]

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Predicted Domain #1
Region A:
Residues: [1-257]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVAAAAMIG LPQAYLEGKE VKETSSLVTE LCRHFYTQGW VSGTGGSITM KVHDASIPKP  60
   61 EQLIVMSPSG VQKERMQPED MYILSANGSI ISTPSPKPYP NKPPKCTDCA PLFMKAYEMR 120
  121 NAGAVIHSHG MESCLVTMLN PQAKEFRITH MEMIKGIQGH GYYDELVVPI IENTAYENEL 180
  181 TDSLTKAIEA YPKATAVLVR NHGVYIWGDS WIHAKTQAEC YHYLFDAAIK LHQLGLDAAT 240
  241 PDHGPIRRTI HSQIKDS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.30103
Match: 1jdiA
Description: L-ribulose-5-phosphate 4-epimerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.89539096965643 bayes_pls_golite062009
catalytic activity 1.58067730905989 bayes_pls_golite062009
protein binding 0.401574215469404 bayes_pls_golite062009
lyase activity 0.114082266751758 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [258-335]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QYEREWPRRW IVLDIEGTTT PITFVTDVLF PYARENVGKH LNLTYHTAET QEDIKLLRAQ  60
   61 VEEDLREGVT GAVPIPHA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.69
Match: 2g80A
Description: No description for 2g80A was found.

Predicted Domain #3
Region A:
Residues: [336-507]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEGKEKVIAA MVSNVEAMIR ADRKITALKE LQGHIWRTGF ECDELKAIVF EDVADALEKW  60
   61 HSSGIKVYIY SSGSRLAQKL LFGNTDYGDL RKYISGFFDT TIGNKKESRS YKEIKETLGV 120
  121 DDPAEIMFVT DVYQEAVAAK AAGLEAIISI RPGNAPLPEN HGFKTVTSFS QI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.522879
Match: 2g80A
Description: No description for 2g80A was found.

Predicted functions:

Term Confidence Notes
catalytic activity 1.55296860681783 bayes_pls_golite062009
binding 1.09759217679659 bayes_pls_golite062009
hydrolase activity 0.327885125504704 bayes_pls_golite062009
nucleic acid binding 0.313395588212099 bayes_pls_golite062009
DNA binding 0.229755837268321 bayes_pls_golite062009
phosphatase activity 0.159899259988948 bayes_pls_golite062009
phosphoric ester hydrolase activity 0.103902756538853 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle