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View Structure Prediction Details

Protein: SETH3_ARATH
Organism: Arabidopsis thaliana
Length: 350 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SETH3_ARATH.

Description E-value Query
Range
Subject
Range
gi|67093770, gi|... - gi|67658682|ref|ZP_00456052.1| KpsF/GutQ [Burkholderia cenocepacia AU 1054], gi|67093770|gb|EAM11309...
gi|67665661, gi|... - gi|67665661|ref|ZP_00462921.1| KpsF/GutQ [Burkholderia cenocepacia HI2424], gi|67100754|gb|EAM17904....
223.0 [0..19] [350..27]

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Predicted Domain #1
Region A:
Residues: [1-350]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLPPPSLD FSSIDHNSLK NGGSSHQEIS HDNLLNLFKS QQDLLNHFFK HLDLSQTLDF  60
   61 SRILLSTTGT VFFTGVGKSA FVANKVSQTL VSLSFRSSFL SPLDALHGDI GALSPRDVLV 120
  121 FFSKSGATEE LLRLVPCARA KGAFLVSLTS VSGNPLAGVC DMNVHLPLQR ELCPFNLAPV 180
  181 TSTAIQMVFG DTIAVALMAA RNLSKEEYAA NHPAGRIGKS LIFKVKDVMK KQEELPVCKE 240
  241 GDLIMDQLVE LTSKGCGCLL VVDEHSRLIG TFTDGDLRRT LKASGEAIFK LSVGEMCNRK 300
  301 PRTIGPETMA VEAMKKMESP PSPVQFLPVV NEDNTLIGIV TLHGLVSAGL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.69897
Match: 1moqA
Description: ISOMERASE DOMAIN OF GLUCOSAMINE 6-PHOSPHATE SYNTHASE COMPLEXED WITH GLUCOSAMINE 6-PHOSPHATE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
D-sedoheptulose 7-phosphate isomerase activity 1.86053765663232 bayes_pls_golite062009
catalytic activity 1.5278037255884 bayes_pls_golite062009
glutamine-fructose-6-phosphate transaminase (isomerizing) activity 1.11549102314657 bayes_pls_golite062009
glucose-6-phosphate isomerase activity 0.990057055836447 bayes_pls_golite062009
isomerase activity 0.875614547872629 bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses 0.718035369881213 bayes_pls_golite062009
intramolecular oxidoreductase activity 0.543772038478781 bayes_pls_golite062009
binding 0.146189542470011 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle