YRC Public Data Repository - Protein Structure Prediction

Protein:	APRR3_ARATH
Organism:	Arabidopsis thaliana
Length:	495 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APRR3_ARATH.

Description	E-value	Query Range	Subject Range
gi\|158320115, gi... - gi\|158320115\|ref\|YP_001512622.1\| two component, sigma54 specific, Fis family transcriptional regulat...	330.0	[0..62]	[488..1]
gi\|88925965, gi\|... - gi\|88944328\|ref\|ZP_01147651.1\| Helix-turn-helix, Fis-type [Desulfotomaculum reducens MI-1], gi\|88925...	328.0	[0..64]	[486..3]
gi\|146398219, gi... - gi\|88934576\|ref\|ZP_01140218.1\| Helix-turn-helix, Fis-type [Geobacter uraniumreducens Rf4], gi\|889187...	321.0	[0..62]	[489..1]
gi\|93451451, gi\|... - gi\|94268821\|ref\|ZP_01291291.1\| Response regulator receiver [delta proteobacterium MLMS-1], gi\|934514...	319.0	[0..63]	[489..1]
gi\|242377856, gi... - gi\|251785583\|ref\|YP_002999887.1\| hypothetical protein B21_02106 [Escherichia coli BL21], gi\|24237785... gi\|253772856, gi... - gi\|254288993\|ref\|YP_003054741.1\| fused response regulator of ato operon, in two-component system wit... gi\|253974133, gi... - gi\|254162232\|ref\|YP_003045340.1\| fused response regulator of ato operon, in two-component system wit... EG11668 - fused response regulator of ato operon, in two-component system with AtoS: response regulator /sigma5... gi\|188494177, gi... - gi\|75514413\|ref\|ZP_00736691.1\| COG2204: Response regulator containing CheY-like receiver, AAA-type A... gi\|75196263, gi\|... - gi\|75196263\|ref\|ZP_00706333.1\| COG2204: Response regulator containing CheY-like receiver, AAA-type A... EG11668 - fused response regulator of ato operon, in two-component system with AtoS: response regulator /sigma5... gi\|169889675, gi... - gi\|170081840\|ref\|YP_001731160.1\| fused response regulator of ato operon, in two-component system wit... gi\|1736875, gi\|8... - gi\|89109039\|ref\|AP_002819.1\| fused response regulator of ato opeon, in two-component system with Ato... ATOC_ECOLI - Acetoacetate metabolism regulatory protein atoC (Ornithine/arginine decarboxylase inhibitor) (Ornith... gi\|238901395, gi... - gi\|238901395\|ref\|YP_002927191.1\| fused response regulator of ato operon, in two-component system wit...	315.0	[0..60]	[491..1]
gi\|75243036, gi\|... - gi\|75243036\|ref\|ZP_00726742.1\| COG2204: Response regulator containing CheY-like receiver, AAA-type A... gi\|91211514, gi\|... - gi\|91211514\|ref\|YP_541500.1\| acetoacetate metabolism regulatory protein AtoC [Escherichia coli UTI89... gi\|218559138, gi... - gi\|218559138\|ref\|YP_002392051.1\| acetoacetate metabolism regulatory protein AtoC [Escherichia coli S... gi\|110344022, gi... - gi\|110642430\|ref\|YP_670160.1\| acetoacetate metabolism regulatory protein AtoC [Escherichia coli 536]... gi\|218427947, gi... - gi\|218690383\|ref\|YP_002398595.1\| acetoacetate metabolism regulatory protein AtoC [Escherichia coli E... gi\|115513538, gi... - gi\|117624414\|ref\|YP_853327.1\| acetoacetate metabolism regulatory protein AtoC [Escherichia coli APEC... gi\|237704695, gi... - gi\|237704695\|ref\|ZP_04535176.1\| acetoacetate metabolism regulatory protein AtoC [Escherichia sp. 3_2... gi\|227835628, gi... - gi\|227887278\|ref\|ZP_04005083.1\| acetoacetate metabolism regulatory protein AtoC [Escherichia coli 83... gi\|26109014, gi\|... - gi\|26248609\|ref\|NP_754649.1\| acetoacetate metabolism regulatory protein AtoC [Escherichia coli CFT07...	315.0	[0..60]	[491..1]
gi\|74312742, gi\|... - gi\|74312742\|ref\|YP_311161.1\| acetoacetate metabolism regulatory protein AtoC [Shigella sonnei Ss046]...	314.0	[0..60]	[491..1]
gi\|24115288, gi\|... - gi\|24115288\|ref\|NP_709798.1\| transcriptional regulatory protein ZraR [Shigella flexneri 2a str. 301]... gi\|30042974, gi\|... - gi\|30064714\|ref\|NP_838885.1\| transcriptional regulatory protein ZraR [Shigella flexneri 2a str. 2457...	314.0	[0..59]	[483..1]
gi\|75228125, gi\|... - gi\|75228125\|ref\|ZP_00714794.1\| COG2204: Response regulator containing CheY-like receiver, AAA-type A... gi\|187730825, gi... - gi\|75179635\|ref\|ZP_00699639.1\| COG2204: Response regulator containing CheY-like receiver, AAA-type A...	313.0	[0..59]	[483..1]

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Predicted Domain #1

Region A:
Residues: [1-398]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCFNNIETGD EVETERQVFG SSEEDEFRVE DTARNTNNVQ ISQQQQQPLA HVVKWERYLP  60
   61 VRSLKVLLVE NDDSTRHIVT ALLKNCSYEV TAVPDVLEAW RILEDEKSCI DLVLTEVDMP 120
  121 VHSGTGLLSK IMSHKTLKNI PVIMMSSHDS MVLVFKCLSN GAVDFLVKPI RKNELKNLWQ 180
  181 HVWRRCHSSS GSGSESGIHD KKSVKPESTQ GSENDASISD EHRNESGSSG GLSNQDGGSD 240
  241 NGSGTQSSWT KRASDTKSTS PSNQFPDAPN KKGTYENGCA HVNRLKEAED QKEQIGTGSQ 300
  301 TGMSMSKKAE EPGDLEKNAK YSVQALERNN DDTLNRSSGN SQVESKAPSS NREDLQSLEQ 360
  361 TLKKTREDRD YKVGDRSVLR HSNLSAFSKY NNGATSAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.0
Match:	1ny5A
Description:	Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [399-495]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KAPEENVESC SPHDSPIAKL LGSSSSSDNP LKQQSSGSDR WAQREAALMK FRLKRKERCF  60
   61 EKKVRYHSRK KLAEQRPHVK GQFIRKRDDH KSGSEDN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits