YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|15240060, gi|...
Organism: Arabidopsis thaliana
Length: 239 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15240060, gi|....

Description E-value Query
Range
Subject
Range
Y5986_ARATH - Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=2 SV=1
190.0 [0..8] [238..133]

Back

Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGMKERLVK KIKLITTVKT LKQSLTLHKS TIDRTIHHLR DEIVAESGQS KGCVTPTLLE  60
   61 LEDAEEHNLE EERGILLEFK ENCPPGGEDS VVFYTTGLRS VRKTFEACRR VRFLLENHQV 120
  121 MYRERDVSMD SEFREEMWRL LGGKVTSPRL FIRGRYIGGA EEVVALNENG KLKKLLQGI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.69897
Match: 2ht9A
Description: No description for 2ht9A was found.

Predicted Domain #2
Region A:
Residues: [180-239]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQVDSPCESC ENERFLICSS CNGSTRLLAE HHDEESSNDN MWTRCRECNE NGLVKCPLCT  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 1exkA
Description: Cysteine-rich domain of the chaperone protein DnaJ.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.036672061154828 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle