| Protein: | PTBP2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 429 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTBP2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
233.0 | [0..1] | [429..85] |
|
Region A: Residues: [1-234] |
1 11 21 31 41 51
| | | | | |
1 MSSVSSQPQF RYTQPPSKVL HLRNLPWECT EEELIELGKP FGTVVNTKCN VGANRNQAFI 60
61 EFEDLNQAIQ MISYYASSSE PAQVRGKTVY LQYSNRQEIV NNKTTADVVG NVLLVTIEGD 120
121 DARMVSIDVL HLVFSAFGFV HKITTFEKTA GYQALVQFTD AETATAAKLA LDGRSIPRYL 180
181 LAETVGQCSL KITYSAHTDL TVKFQSHRSR DYTNPYLPVA PSAIDSTGQV AVGV
|
| Detection Method: |  |
| Confidence: | 5.77 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.787118623292657 | bayes_pls_golite062009 |
| nucleic acid binding | 0.0269483316710413 | bayes_pls_golite062009 |
|
Region A: Residues: [235-429] |
1 11 21 31 41 51
| | | | | |
1 DGKKMEPESN VLLASIENMQ YAVTLDVLHM VFAAFGEVQK IAMFDKNGGV QALIQYSDVQ 60
61 TAVVAKEALE GHCIYDGGFC KLHITYSRHT DLSIKVNNDR SRDYTMPNPP VPMPQQPVQN 120
121 PYAGNPQQYH AAGGSHHQQQ QQPQGGWVQP GGQGSMGMGG GGHNHYMAPP SSSSMHQGPG 180
181 GHMPPQHYGG PGPMH
|
| Detection Method: | |
| Confidence: | 7.522879 |
| Match: | 1sjrA |
| Description: | NMR Structure of RRM2 from Human Polypyrimidine Tract Binding Protein Isoform 1 (PTB1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
