YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|25405165, gi|...
Organism: Arabidopsis thaliana
Length: 438 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25405165, gi|....

Description E-value Query
Range
Subject
Range
DAPE_THICR - Succinyl-diaminopimelate desuccinylase OS=Thiomicrospira crunogena (strain XCL-2) GN=dapE PE=3 SV=1
302.0 [0..28] [428..3]

Back

Predicted Domain #1
Region A:
Residues: [1-200]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAISPLLWTL IIFSIIFSLQ SSSSEEDTPI TRFQQYLRFN TAHPNPNYTA PISFLINQAQ  60
   61 SIGLTTKTIE FISGKPILLI TWLGSNPNLP SILFNSHLDS VPAESEKWTY PPFSAHKTID 120
  121 GHIYARGAQD DKCIGVQYLE SIRNLKSRGF SPLRTIHISY VPEEEIGGFD GMMKFAASSE 180
  181 FKDLNLGFAM DEGQANPGDE 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.522879
Match: 1q7lA
Description: Zn-binding domain of the T347G mutant of human aminoacylase-I
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
peptidase activity 3.81939870413022 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 3.44941516786903 bayes_pls_golite062009
hydrolase activity 2.78642767439288 bayes_pls_golite062009
exopeptidase activity 1.62986226691096 bayes_pls_golite062009
catalytic activity 1.3989281287879 bayes_pls_golite062009
metallopeptidase activity 1.13008914743741 bayes_pls_golite062009
carboxypeptidase activity 0.891655769761122 bayes_pls_golite062009
metalloexopeptidase activity 0.53612355623424 bayes_pls_golite062009
metallocarboxypeptidase activity 0.180859448845431 bayes_pls_golite062009
aminopeptidase activity 0.0966237570696103 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [201-343]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FRVFYADRVP WHFVIKAEGI PGHGAKLYDN SAMENLMKSV ELISRFRESQ FDFVKAGKAA  60
   61 YSEVISVNPV YLKAGTPTTT GFVMNMQPSE AEAGYDLRLP PMADPDVMKK RIAEEWAPSI 120
  121 RNMTYSIQEK GKLRDHLGRP IMT

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.51
Match: 2rb7A
Description: No description for 2rb7A was found.

Predicted Domain #3
Region A:
Residues: [344-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVNDSNPWWS IFKQAVEAMG GKLAKPEILA STTDSRFIRT LGIPTFGFSP MTNTPILLHD  60
   61 HNEFLKDTVF MKGIEVYESV ISALSSFEGE SAQVI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.522879
Match: 1q7lB
Description: Zn-binding domain of the T347G mutant of human aminoacylase-I
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle