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View Structure Prediction Details

Protein: SCRK5_ARATH
Organism: Arabidopsis thaliana
Length: 324 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCRK5_ARATH.

Description E-value Query
Range
Subject
Range
SCRK3_ARATH - Probable fructokinase-3 OS=Arabidopsis thaliana GN=At1g06020 PE=2 SV=1
283.0 [0..7] [324..11]

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Predicted Domain #1
Region A:
Residues: [1-324]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANTPLIVSF GEMLIDFVPD TSGVSLAEST GFLKAPGGAP ANVACAITKL GGKSAFIGKF  60
   61 GDDEFGHMLV NILKKNGVNS EGVCFDTNAR TALAFVTLKK DGEREFMFYR NPSADMLLKE 120
  121 SELNKDLIKK AKIFHYGSIS LISEPCRTAH MAAMKTAKDA GVLLSYDPNV RLPLWPSTEA 180
  181 AIEGIKSIWN EADIIKVSDD EVTFLTRGDA EKDDVVLSLM HDKLKLLIVT DGEKGCRYYT 240
  241 KKFKGRVPGY AVKAVDTTGA GDSFVGAFLV SLGKDGSILD DEGKLKEALA FANACGAVCT 300
  301 TQKGAIPALP TPADAQKLMK SKSK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.154902
Match: 1tyyA
Description: Crystal structure of aminoimidazole riboside kinase from Salmonella enterica
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ribokinase activity 4.13972810632318 bayes_pls_golite062009
carbohydrate kinase activity 3.53872211951287 bayes_pls_golite062009
kinase activity 2.44230326483029 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 2.43969902311075 bayes_pls_golite062009
transferase activity 2.15883296431019 bayes_pls_golite062009
phosphofructokinase activity 2.05034657907701 bayes_pls_golite062009
catalytic activity 1.74474587246986 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 1.01768986812996 bayes_pls_golite062009
binding 0.750579388499649 bayes_pls_golite062009
nucleic acid binding 0.43271347210671 bayes_pls_golite062009
DNA binding 0.0886731070705062 bayes_pls_golite062009
transcription regulator activity 0.0561488099067549 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle