YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: DIM1A_ARATH
Organism: Arabidopsis thaliana
Length: 353 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DIM1A_ARATH.

Description E-value Query
Range
Subject
Range
gi|110288720, gi... - gi|215704636|dbj|BAG94264.1| unnamed protein product [Oryza sativa Japonica Group], gi|115481328|ref...
gi|218184228 - gi|218184228|gb|EEC66655.1| hypothetical protein OsI_32926 [Oryza sativa Indica Group]
275.0 [0..1] [353..1]

Back

Predicted Domain #1
Region A:
Residues: [1-353]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGKIRKEK PKASNRAPSN HYQGGISFHK SKGQHILKNP LLVDSIVQKA GIKSTDVILE  60
   61 IGPGTGNLTK KLLEAGKEVI AVELDSRMVL ELQRRFQGTP FSNRLKVIQG DVLKTELPRF 120
  121 DICVANIPYQ ISSPLTFKLL FHPTSFRCAV IMYQREFAMR LVAQPGDNLY CRLSVNTQLY 180
  181 ARVSHLLKVG KNNFRPPPKV DSSVVRIEPR RPGPQVNKKE WDGFLRVCFI RKNKTLGSIF 240
  241 KQKSVLSMLE KNFKTLQAVL ASLQNNGEPA LNTTSMDLGD QSMGMEDDDN EMDDDDMEMD 300
  301 EGEGDGGETS EFKEKVMNVL KEGGFEEKRS SKLSQQEFLY LLSLFNKSGI HFT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.154902
Match: 1zq9A
Description: Crystal structure of human Dimethyladenosine transferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
methyltransferase activity 4.15445027778357 bayes_pls_golite062009
rRNA methyltransferase activity 4.09362182773099 bayes_pls_golite062009
N-methyltransferase activity 4.07806017452628 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 4.07153733729662 bayes_pls_golite062009
protein methyltransferase activity 3.92746815303714 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 3.39429041855776 bayes_pls_golite062009
RNA methyltransferase activity 3.07428840534971 bayes_pls_golite062009
histone methyltransferase activity 2.99461585647365 bayes_pls_golite062009
DNA-methyltransferase activity 2.43145108778901 bayes_pls_golite062009
protein-arginine N-methyltransferase activity 2.41876112831625 bayes_pls_golite062009
arginine N-methyltransferase activity 2.41876112831625 bayes_pls_golite062009
transferase activity 2.22303238506686 bayes_pls_golite062009
histone-arginine N-methyltransferase activity 2.04296107639729 bayes_pls_golite062009
rRNA (guanine) methyltransferase activity 2.00108769169811 bayes_pls_golite062009
RNA binding 1.99752836873461 bayes_pls_golite062009
rRNA (adenine) methyltransferase activity 1.83964463328968 bayes_pls_golite062009
tRNA methyltransferase activity 1.76571145896453 bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity 1.75675289134467 bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity 1.66871163498737 bayes_pls_golite062009
catalytic activity 1.25333584501255 bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific) 1.1103522853299 bayes_pls_golite062009
transcription regulator activity 0.914549843668268 bayes_pls_golite062009
rRNA (uridine-2'-O-)-methyltransferase activity 0.90544396691236 bayes_pls_golite062009
protein-arginine omega-N asymmetric methyltransferase activity 0.89325812193225 bayes_pls_golite062009
DNA binding 0.86027591375666 bayes_pls_golite062009
binding 0.777596419415505 bayes_pls_golite062009
rRNA (uridine) methyltransferase activity 0.742142092552002 bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity 0.703178429468566 bayes_pls_golite062009
tRNA (cytosine)-methyltransferase activity 0.672282175551951 bayes_pls_golite062009
tRNA (cytosine-5-)-methyltransferase activity 0.672282175551951 bayes_pls_golite062009
nucleic acid binding 0.616949327277483 bayes_pls_golite062009
tRNA (adenine-N1-)-methyltransferase activity 0.1772047818218 bayes_pls_golite062009
tRNA (adenine)-methyltransferase activity 0.1772047818218 bayes_pls_golite062009
mRNA binding 0.0540207721800283 bayes_pls_golite062009
snoRNA binding 0.00848192089639488 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle