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View Structure Prediction Details

Protein: gi|15224243, gi|...
Organism: Arabidopsis thaliana
Length: 538 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15224243, gi|....

Description E-value Query
Range
Subject
Range
gi|8978336, gi|1... - gi|8978336|dbj|BAA98189.1| unnamed protein product [Arabidopsis thaliana], gi|15238939|ref|NP_199643...
449.0 [0..37] [534..462]

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Predicted Domain #1
Region A:
Residues: [1-63]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKTLDLFWH EHPLYEKYRM FTCQECHRSA IPFFEVFYGC FRCNIKWHPY CVPRSTKNIN  60
   61 HPC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.09691
Match: 1xa6A
Description: Crystal Structure of the Human Beta2-Chimaerin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.0980674097362609 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [64-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPNHPLEVLL QGPPSYSDEK CSLCQRKLSN FVYHCKLCNF SIDMECGNRP PPHKVDHPKC  60
   61 HEHALTLMG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.05
Match: 1v5nA
Description: Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.0196698141692984 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [133-174]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 REVSFTCNAC GTHGERNPYV CLPCSVMFHY DCIDLPHVIN IN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.0
Match: 1tbnA
Description: NMR STRUCTURE OF A PROTEIN KINASE C-G PHORBOL-BINDING DOMAIN, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.0980674097362609 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [175-538]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RHDHRISHSY PLKRGNWVCE ICRQDINTTY GGYSCNKCPD FFVHSKCATR KDVWDGTELE  60
   61 GIPEEVVDVA PFEVIEEGVI YHFSHEKHNL FLIEDVFIDG AEDMHCEACA RPVSSEKHYK 120
  121 CVECKFILHE ECANLPLTKR HGLSTGIFYL RFGKDFSEQN FSCDACNRDG RGFSYKDEEG 180
  181 VVLDVLCASL SFFKHPKLHP HTLFLTTIDR GTCLACGENK LNVLRCVDCD YSLDYKCATL 240
  241 PLVIKHRCDT HYLVLRSGEE APEGKYWCEI CEAETNPERW FYTCDDCGVV CHIECVTGDF 300
  301 LNIKPGIIMK NRENKFEVGF NDHDSRPKCT DCGSRCRFPR FFKVTRKNIE YYYCSKACFQ 360
  361 NAKF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.64
Match: 1oahA
Description: Cytochrome c nitrite reductase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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