| Protein: | gi|51971921, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 471 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51971921, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
296.0 | [0..1] | [470..18] |
|
Region A: Residues: [1-84] |
1 11 21 31 41 51
| | | | | |
1 MSRTRTAASE AHDSMESEER VDLDGDNDPE EILEEEVEYE EVEEEEIEEI EEEIEEEVEV 60
61 EEEEEEEDAV ATEEEEEKKR HVEL
|
| Detection Method: |  |
| Confidence: | 40.39794 |
| Match: | 1po6A |
| Description: | Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 4.33825636300428 | bayes_pls_golite062009 |
| binding | 3.21467519876408 | bayes_pls_golite062009 |
| RNA binding | 2.41328743949172 | bayes_pls_golite062009 |
| protein binding | 2.17260848225967 | bayes_pls_golite062009 |
| transcription regulator activity | 1.58383432105811 | bayes_pls_golite062009 |
| mRNA binding | 1.43710066986329 | bayes_pls_golite062009 |
| DNA binding | 1.39336947685216 | bayes_pls_golite062009 |
| transcription factor activity | 0.535968997434099 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.126508490547083 | bayes_pls_golite062009 |
|
Region A: Residues: [85-361] |
1 11 21 31 41 51
| | | | | |
1 LALPPHGSEV YLGGIPTDAT EGDLKGFCGS IGEVTEVRIM REKDSGDGKG YAFVTFRSKD 60
61 LAAEAIDTLN NTDFRGKRIK CSTTQAKHRL FLGNVPRNWM ESDIKKAANR IGPGVQIVEL 120
121 PKEPQNMGRN RGFAFIEYYN HACAEYSKQK MSNPSFKLDD NAPTVSWAES RSGGGGDSSA 180
181 SQVKALYIKN LPRDITQERL KALFEHHGKI LKVVIPPAKP GKEDSRYGFV HYAERTSVMR 240
241 ALKNTERYEI DGHMLDCTLA KPQADQKTNT NTVQNVQ
|
| Detection Method: | |
| Confidence: | 20.221849 |
| Match: | 2ghpA |
| Description: | No description for 2ghpA was found. |
| Term | Confidence | Notes |
| nucleic acid binding | 4.33825636300428 | bayes_pls_golite062009 |
| binding | 3.21467519876408 | bayes_pls_golite062009 |
| RNA binding | 2.41328743949172 | bayes_pls_golite062009 |
| protein binding | 2.17260848225967 | bayes_pls_golite062009 |
| transcription regulator activity | 1.58383432105811 | bayes_pls_golite062009 |
| mRNA binding | 1.43710066986329 | bayes_pls_golite062009 |
| DNA binding | 1.39336947685216 | bayes_pls_golite062009 |
| transcription factor activity | 0.535968997434099 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.126508490547083 | bayes_pls_golite062009 |
|
Region A: Residues: [362-471] |
1 11 21 31 41 51
| | | | | |
1 KSQLQPNYPP LLSYGMAPSP FGALGGFGAS AYSQPLMHAG GHAAGGMSMM PIMLPDGRIG 60
61 YVLQQPGLAA MPQPPPRHSP PYRGGSGSSS SSGSKRSSDN GRGRSRYNPY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
