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View Structure Prediction Details

Protein: WOX6_ARATH
Organism: Arabidopsis thaliana
Length: 271 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WOX6_ARATH.

Description E-value Query
Range
Subject
Range
PAX7_MOUSE - Paired box protein Pax-7 OS=Mus musculus GN=Pax7 PE=1 SV=2
gi|162319578, gi... - gi|162319578|gb|AAI56885.1| Paired box gene 7 [synthetic construct], gi|162318458|gb|AAI56073.1| Pai...
136.0 [0..2] [242..141]

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Predicted Domain #1
Region A:
Residues: [1-125]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYISNNNLI NYLPLSTTQP PLLLTHCDIN GNDHHQLITA SSGEHDIDER KNNIPAAATL  60
   61 RWNPTPEQIT TLEELYRSGT RTPTTEQIQQ IASKLRKYGR IEGKNVFYWF QNHKARERLK 120
  121 RRRRE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.0
Match: 1b72A
Description: Homeobox protein hox-b1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.334577365229545 bayes_pls_golite062009
transcription regulator activity 0.0696342306231097 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [126-271]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGAIIKPHKD VKDSSSGGHR VDQTKLCPSF PHTNRPQPQH ELDPASYNKD NNANNEDHGT  60
   61 TEESDQRASE VGKYATWRNL VTWSITQQPE EINIDENVNG EEEETRDNRT LNLFPVREYQ 120
  121 EKTGRLIEKT KACNYCYYYE FMPLKN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle